Strain identifier

BacDive ID: 143644

Type strain: No

Species: Campylobacter majalis

NCBI tax ID(s): 2790656 (species)

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General

@ref: 47196

BacDive-ID: 143644

keywords: genome sequence, Bacteria

description: Campylobacter majalis CCUG 20705 is a bacterium that was isolated from Pig intestine.

NCBI tax id

  • NCBI tax id: 2790656
  • Matching level: species

doi: 10.13145/bacdive143644.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter majalis
  • full scientific name: Campylobacter majalis Lynch et al. 2022

@ref: 47196

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter sp.

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316199urea-hydrolysis
68373606565hippurate-hydrolysis
6837378019triphenyltetrazolium chloride-reduction
6837317634D-glucose-assimilation
6837330031succinate-assimilation
6837317272propionate-assimilation
6837325115malate-assimilation
6837316947citrate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

  • @ref: 68373
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
68373alkaline phosphatase-3.1.3.1
68373L-aspartate arylamidase-3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase-2.3.2.2
68373urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    47196C12:05.212
    47196C13:00.613
    47196C14:015.114
    47196C15:0115
    47196C16:024.316
    47196C12:0 ALDE ?1.410.915
    47196C13:0 ISO 2OH0.613.814
    47196C13:1 at 12-131.812.931
    47196C14:0 3OH/C16:1 ISO I415.485
    47196C16:0 3OH2.317.52
    47196C16:1 ω7c20.615.819
    47196C17:0 CYCLO0.916.888
    47196C18:1 ω7c /12t/9t20.417.824
    47196C18:2 ω6,9c/C18:0 ANTE1.917.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
47196-++-------+----+-----
47196----------+---------+

Isolation, sampling and environmental information

isolation

  • @ref: 47196
  • sample type: Pig intestine
  • geographic location: Preston
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Gastrointestinal tract

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter majalis LMG 7974GCA_905120465contigncbi2790656
66792Campylobacter sp. LMG 79742790656.3wgspatric2790656

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes90.093no
gram-positiveno98.471no
anaerobicno59.964no
halophileno83.753no
spore-formingno94.504no
glucose-utilno89.009yes
flagellatedyes67.472no
aerobicno98.087no
thermophileno90.311no
glucose-fermentno87.901no

External links

@ref: 47196

culture collection no.: CCUG 20705, LMG 7974

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
47196Curators of the CCUGhttps://www.ccug.se/strain?id=20705Culture Collection University of Gothenburg (CCUG) (CCUG 20705)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68373Automatically annotated from API CAM