Strain identifier

BacDive ID: 143644

Type strain: No

Species: Campylobacter majalis

NCBI tax ID(s): 205 (species)

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General

@ref: 47196

BacDive-ID: 143644

keywords: genome sequence, 16S sequence, Bacteria, Gram-negative

description: Campylobacter majalis CCUG 20705 is a Gram-negative bacterium that was isolated from Pig intestine.

NCBI tax id

  • NCBI tax id: 205
  • Matching level: species

doi: 10.13145/bacdive143644.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter majalis
  • full scientific name: Campylobacter majalis Lynch et al. 2022

@ref: 47196

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter sp.

type strain: no

Morphology

cell morphology

@refgram stainconfidence
125439negative99.6
125438negative97.294

Physiology and metabolism

spore formation

@refspore formationconfidence
125439no99.4
125438no92.598

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316947citrate-assimilation
6837317272propionate-assimilation
6837325115malate-assimilation
6837317634D-glucose-assimilation
6837330031succinate-assimilation
6837316199urea-hydrolysis
6837378019triphenyltetrazolium chloride-reduction
68373606565hippurate-hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

  • @ref: 68373
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
68373pyrrolidonyl arylamidase-3.4.19.3
68373alkaline phosphatase-3.1.3.1
68373L-aspartate arylamidase-3.4.11.21
68373L-arginine arylamidase-
68373gamma-glutamyltransferase-2.3.2.2
68373urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    47196C12:05.212
    47196C13:00.613
    47196C14:015.114
    47196C15:0115
    47196C16:024.316
    47196C12:0 ALDE ?1.410.915
    47196C13:0 ISO 2OH0.613.814
    47196C13:1 at 12-131.812.931
    47196C14:0 3OH/C16:1 ISO I415.485
    47196C16:0 3OH2.317.52
    47196C16:1 ω7c20.615.819
    47196C17:0 CYCLO0.916.888
    47196C18:1 ω7c /12t/9t20.417.824
    47196C18:2 ω6,9c/C18:0 ANTE1.917.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
47196-++-------+----+-----
47196----------+---------+

Isolation, sampling and environmental information

isolation

  • @ref: 47196
  • sample type: Pig intestine
  • geographic location: Preston
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Gastrointestinal tract

Sequence information

16S sequences

  • @ref: 124043
  • description: Campylobacter sp. LMG 7974 partial 16S rRNA gene, strain LMG 7974
  • accession: LR989048
  • length: 1507
  • database: nuccore
  • NCBI tax ID: 2790656

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter majalis LMG 7974GCA_905120465contigncbi2790656
66792Campylobacter sp. LMG 79742790656.3wgspatric2790656

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno97.294no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no60.644no
125438spore-formingspore-formingAbility to form endo- or exosporesno92.598no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no87.685no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno89.893no
125438motile2+flagellatedAbility to perform flagellated movementyes58.562no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno99.4
125439BacteriaNetmotilityAbility to perform movementno64.9
125439BacteriaNetgram_stainReaction to gram-stainingnegative99.6
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthfacultative aerobe60.6

External links

@ref: 47196

culture collection no.: CCUG 20705, LMG 7974

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
47196Curators of the CCUGhttps://www.ccug.se/strain?id=20705Culture Collection University of Gothenburg (CCUG) (CCUG 20705)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68373Automatically annotated from API CAM
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG