Strain identifier
version 8.1 (current version)
General
@ref: 47192
BacDive-ID: 143642
keywords: Bacteria
description: Helicobacter cinaedi CCUG 20698 is a bacterium that was isolated from Human feces,child,female,diarrhea.
NCBI tax id
- NCBI tax id: 213
- Matching level: species
doi: 10.13145/bacdive143642.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Helicobacteraceae
- genus: Helicobacter
- species: Helicobacter cinaedi
- full scientific name: Helicobacter cinaedi (Totten et al. 1988) Vandamme et al. 1991
synonyms
- @ref: 20215
- synonym: Campylobacter cinaedi
@ref: 47192
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Helicobacteraceae
genus: Helicobacter
species: Helicobacter cinaedi
type strain: no
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68373 | 16199 | urea | - | hydrolysis |
68373 | 606565 | hippurate | - | hydrolysis |
68373 | 78019 | triphenyltetrazolium chloride | - | reduction |
68373 | 17634 | D-glucose | - | assimilation |
68373 | 30031 | succinate | - | assimilation |
68373 | 30089 | acetate | - | assimilation |
68373 | 17272 | propionate | - | assimilation |
68373 | 25115 | malate | - | assimilation |
68373 | 16947 | citrate | - | assimilation |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. |
---|---|---|---|---|---|
68373 | 48923 | erythromycin | yes | yes | 14 µg |
68373 | 474053 | cefazolin | yes | yes | 224 µg |
68373 | 100147 | nalidixic acid | yes | yes | 84 µg |
metabolite production
- @ref: 68373
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
68373 | L-aspartate arylamidase | - | 3.4.11.21 |
68373 | L-arginine arylamidase | - | |
68373 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68373 | gamma-glutamyltransferase | - | 2.3.2.2 |
68373 | esterase | - | |
68373 | urease | - | 3.5.1.5 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 47192 C12:0 7.6 12 47192 C13:0 1.1 13 47192 C14:0 24.7 14 47192 C15:0 2 15 47192 C16:0 33.9 16 47192 C17:0 1.4 17 47192 C18:0 0.3 18 47192 C12:0 3OH 1.8 13.455 47192 C13:0 ISO 2OH 0.3 13.814 47192 C14:0 3OH/C16:1 ISO I 0.2 15.485 47192 C14:0 ISO 0.1 13.618 47192 C16:0 3OH 2.4 17.52 47192 C16:1 ω7c 0.6 15.819 47192 C17:1 ω6c 0.5 16.862 47192 C18:1 ω7c /12t/9t 21 17.824 47192 C18:1 ω9c 0.1 17.769 47192 C18:2 ω6,9c/C18:0 ANTE 1.2 17.724 47192 Unidentified 0.2 13.735 47192 Unidentified 0.2 15.929 47192 unknown 12.486 0.4 12.486 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API CAM
@ref | URE | NIT | EST | HIP | GGT | TTC | PYRA | ArgA | AspA | PAL | H2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | ERO | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
47192 | - | + | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | + |
47192 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 47192
- sample type: Human feces,child,female,diarrhea
- sampling date: 1986
- geographic location: Preston
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | #Child |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
#Infection | #Disease | |
#Infection | #Patient | |
#Host | #Human | #Female |
External links
@ref: 47192
culture collection no.: CCUG 20698, CCUG 19562, NCTC 11960, LMG 9153
straininfo link
- @ref: 98980
- straininfo: 14283
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
47192 | Curators of the CCUG | https://www.ccug.se/strain?id=20698 | Culture Collection University of Gothenburg (CCUG) (CCUG 20698) | |
68373 | Automatically annotated from API CAM | |||
98980 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID14283.1 |