Strain identifier

BacDive ID: 143515

Type strain: No

Species: Francisella philomiragia

NCBI tax ID(s): 28110 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 47052

BacDive-ID: 143515

keywords: genome sequence, Bacteria

description: Francisella philomiragia CCUG 19701 is a bacterium that was isolated from Water,river.

NCBI tax id

  • NCBI tax id: 28110
  • Matching level: species

doi: 10.13145/bacdive143515.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Beggiatoales
  • family: Francisellaceae
  • genus: Francisella
  • species: Francisella philomiragia
  • full scientific name: Francisella philomiragia (Jensen et al. 1969) Hollis et al. 1990

  • synonyms

    • @ref: 20215
    • synonym: Yersinia philomiragia

@ref: 47052

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Thiotrichales

family: Francisellaceae

genus: Francisella

species: Francisella philomiragia

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.459
6948099.958negative

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.999

enzymes

@refvalueactivityec
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
47052-+++-+----++-----+--

Isolation, sampling and environmental information

isolation

  • @ref: 47052
  • sample type: Water,river
  • geographic location: Utah,Bear River Refuge
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #River (Creek)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Francisella philomiragia subsp. philomiragia ATCC 25017484022.8completepatric484022
66792Francisella philomiragia subsp. philomiragia ATCC 25017484022.18plasmidpatric484022
66792Francisella philomiragia subsp. philomiragia ATCC 25017484022.19plasmidpatric484022
66792Francisella philomiragia philomiragia ATCC 25017641522628completeimg484022

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno95.135no
anaerobicno97.441no
halophileno82.01no
spore-formingno96.408no
glucose-utilyes73.862no
aerobicno50no
thermophileno98.975no
motileno90.841no
flagellatedno96.186no
glucose-fermentno80.021no

External links

@ref: 47052

culture collection no.: CCUG 19701, ATCC 25017

straininfo link

  • @ref: 98869
  • straininfo: 44702

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology19615403Description of two new plasmids isolated from Francisella philomiragia strains and construction of shuttle vectors for the study of Francisella tularensis.Le Pihive E, Blaha D, Chenavas S, Thibault F, Vidal D, Valade EPlasmid10.1016/j.plasmid.2009.07.0012009Anti-Bacterial Agents/pharmacology, Cloning, Molecular, Drug Resistance, Bacterial/*genetics, Escherichia coli/genetics, Francisella tularensis/drug effects/*genetics/pathogenicity, Genetic Complementation Test, Genetic Vectors/genetics, Green Fluorescent Proteins/genetics, Plasmids/*genetics/isolation & purification, Sequence Analysis, DNA, *Transformation, BacterialTranscriptome
Phylogeny19783615Description of Francisella hispaniensis sp. nov., isolated from human blood, reclassification of Francisella novicida (Larson et al. 1955) Olsufiev et al. 1959 as Francisella tularensis subsp. novicida comb. nov. and emended description of the genus Francisella.Huber B, Escudero R, Busse HJ, Seibold E, Scholz HC, Anda P, Kampfer P, Splettstoesser WDInt J Syst Evol Microbiol10.1099/ijs.0.015941-02009Blood/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Francisella/*classification/genetics/*isolation & purification/metabolism, Gram-Negative Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Genetics22628499Complete genome sequence of Francisella philomiragia ATCC 25017.Zeytun A, Malfatti SA, Vergez LM, Shin M, Garcia E, Chain PSJ Bacteriol10.1128/JB.00413-122012DNA, Bacterial/*chemistry/*genetics, Francisella/*genetics/isolation & purification, Fresh Water/microbiology, *Genome, Bacterial, Molecular Sequence Data, Sequence Analysis, DNA, UtahTranscriptome
Phylogeny22920915Genetic diversity within the genus Francisella as revealed by comparative analyses of the genomes of two North American isolates from environmental sources.Siddaramappa S, Challacombe JF, Petersen JM, Pillai S, Kuske CRBMC Genomics10.1186/1471-2164-13-4222012Comparative Genomic Hybridization, DNA, Bacterial/genetics, Evolution, Molecular, Francisella/classification/*genetics/isolation & purification, *Genetic Variation, *Genome, Bacterial, Phylogeny, Sequence Alignment, Sequence Analysis, DNA, SyntenyGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
47052Curators of the CCUGhttps://www.ccug.se/strain?id=19701Culture Collection University of Gothenburg (CCUG) (CCUG 19701)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
98869Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID44702.1