Strain identifier
version 8.1 (current version)
General
@ref: 46984
BacDive-ID: 143450
keywords: Bacteria
description: Helicobacter cinaedi CCUG 19218 is a bacterium that was isolated from Human rectal swab.
NCBI tax id
- NCBI tax id: 213
- Matching level: species
doi: 10.13145/bacdive143450.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Helicobacteraceae
- genus: Helicobacter
- species: Helicobacter cinaedi
- full scientific name: Helicobacter cinaedi (Totten et al. 1988) Vandamme et al. 1991
synonyms
- @ref: 20215
- synonym: Campylobacter cinaedi
@ref: 46984
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Helicobacteraceae
genus: Helicobacter
species: Helicobacter cinaedi
type strain: no
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68373 | 16199 | urea | - | hydrolysis |
| 68373 | 17632 | nitrate | + | reduction |
| 68373 | 606565 | hippurate | - | hydrolysis |
| 68373 | 78019 | triphenyltetrazolium chloride | - | reduction |
| 68373 | 17634 | D-glucose | - | assimilation |
| 68373 | 30031 | succinate | - | assimilation |
| 68373 | 30089 | acetate | + | assimilation |
| 68373 | 17272 | propionate | - | assimilation |
| 68373 | 25115 | malate | - | assimilation |
| 68373 | 16947 | citrate | - | assimilation |
antibiotic resistance
| @ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. |
|---|---|---|---|---|---|
| 68373 | 48923 | erythromycin | yes | yes | 14 µg |
| 68373 | 474053 | cefazolin | yes | yes | 224 µg |
| 68373 | 100147 | nalidixic acid | yes | yes | 84 µg |
metabolite production
- @ref: 68373
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: no
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68373 | catalase | - | 1.11.1.6 |
| 68373 | alkaline phosphatase | + | 3.1.3.1 |
| 68373 | L-aspartate arylamidase | - | 3.4.11.21 |
| 68373 | L-arginine arylamidase | - | |
| 68373 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68373 | gamma-glutamyltransferase | - | 2.3.2.2 |
| 68373 | esterase | - | |
| 68373 | urease | - | 3.5.1.5 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 46984 C12:0 5 12 46984 C13:0 0.5 13 46984 C14:0 22.4 14 46984 C15:0 1.2 15 46984 C16:0 35.5 16 46984 C17:0 0.4 17 46984 C18:0 0.5 18 46984 C12:0 3OH 3.2 13.455 46984 C13:0 ISO 2OH 0.3 13.814 46984 C14:0 3OH/C16:1 ISO I 0.2 15.485 46984 C16:0 3OH 2.9 17.52 46984 C16:1 ω7c 0.5 15.819 46984 C17:1 ω6c 0.3 16.862 46984 C18:1 ω7c /12t/9t 24.8 17.824 46984 C18:2 ω6,9c/C18:0 ANTE 1 17.724 46984 Unidentified 0.3 13.735 46984 Unidentified 0.2 14.733 46984 Unidentified 0.3 15.93 46984 unknown 12.486 0.7 12.486 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API CAM
| @ref | URE | NIT | EST | HIP | GGT | TTC | PYRA | ArgA | AspA | PAL | H2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | ERO | CAT |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46984 | - | + | - | - | - | - | - | - | - | + | - | - | - | - | - | + | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 46984
- sample type: Human rectal swab
- geographic location: Washington,Seattle
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Male |
| #Host Body-Site | #Gastrointestinal tract | #Rectum |
| #Infection | #Patient | #Swab |
External links
@ref: 46984
culture collection no.: CCUG 19218, LMG 8770
straininfo link
- @ref: 98818
- straininfo: 2996
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 46984 | Curators of the CCUG | https://www.ccug.se/strain?id=19218 | Culture Collection University of Gothenburg (CCUG) (CCUG 19218) | |
| 68373 | Automatically annotated from API CAM | |||
| 98818 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID2996.1 |