Strain identifier
BacDive ID: 14321
Type strain: 
Species: Teretinema zuelzerae
Strain history: <- E. Canale-Parola, University of Massachusetts, Department of Microbiology, USA <- ATCC; ATCC 19044 <- H. Veldkamp {1959}
NCBI tax ID(s): 156 (species)
version 8.1 (current version)
General
@ref: 922
BacDive-ID: 14321
DSM-Number: 1903
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Teretinema zuelzerae DSM 1903 is an anaerobe, mesophilic bacterium that was isolated from fresh water mud.
NCBI tax id
- NCBI tax id: 156
- Matching level: species
strain history
- @ref: 922
- history: <- E. Canale-Parola, University of Massachusetts, Department of Microbiology, USA <- ATCC; ATCC 19044 <- H. Veldkamp {1959}
doi: 10.13145/bacdive14321.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Spirochaetales
- family: Treponemataceae
- genus: Teretinema
- species: Teretinema zuelzerae
- full scientific name: Teretinema zuelzerae (Canale-Parola 1980 ex Veldkamp 1960) Song et al. 2023
synonyms
@ref synonym 20215 Treponema zuelzerae 20215 Spirochaeta zuelzerae
@ref: 922
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Spirochaetales
family: Treponemataceae
genus: Treponema
species: Treponema zuelzerae
full scientific name: Treponema zuelzerae (Canale-Parola 1980) Abt et al. 2013
type strain: yes
Culture and growth conditions
culture medium
- @ref: 922
- name: TERETINEMA MEDIUM (DSMZ Medium 169)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium169.pdf
culture temp
- @ref: 922
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 922
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 922
- sample type: fresh water mud
- geographic location: California, Pacific Grove
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Terrestrial | #Mud (Sludge) |
taxonmaps
- @ref: 69479
- File name: preview.99_9004.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_883;96_4256;97_5199;98_6599;99_9004&stattab=map
- Last taxonomy: Treponema zuelzerae subclade
- 16S sequence: FR749929
- Sequence Identity:
- Total samples: 1176
- soil counts: 95
- aquatic counts: 855
- animal counts: 134
- plant counts: 92
Safety information
risk assessment
- @ref: 922
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Spirochaeta zuelzerae partial 16S rRNA gene, type strain DSM 1903T, clone 1 | FR749928 | 3062 | ena | 156 |
| 922 | Spirochaeta zuelzerae partial 16S rRNA gene, type strain DSM 1903T, clone 2 | FR749929 | 1532 | ena | 156 |
Genome sequences
- @ref: 66792
- description: Treponema zuelzerae DSM 1903
- accession: GCA_021021555
- assembly level: contig
- database: ncbi
- NCBI tax ID: 156
GC content
- @ref: 922
- GC-content: 52.7
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 71 | no |
| gram-positive | no | 95.061 | no |
| anaerobic | yes | 99.376 | no |
| aerobic | no | 98.834 | yes |
| halophile | no | 89.404 | no |
| spore-forming | no | 88.206 | no |
| motile | yes | 88.045 | no |
| thermophile | no | 97.374 | no |
| glucose-util | yes | 81.165 | no |
| glucose-ferment | yes | 73.102 | no |
External links
@ref: 922
culture collection no.: DSM 1903, ATCC 19044
straininfo link
- @ref: 83470
- straininfo: 36819
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 922 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1903) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1903 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 83470 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID36819.1 | StrainInfo: A central database for resolving microbial strain identifiers |