Strain identifier
BacDive ID: 1431
Type strain: 
Species: Parageobacillus thermoglucosidasius
Strain Designation: KP 1022, R-32629
Strain history: <- Y. Suzuki, KP 1022
NCBI tax ID(s): 1426 (species)
version 8.1 (current version)
General
@ref: 1117
BacDive-ID: 1431
DSM-Number: 2543
keywords: genome sequence, 16S sequence, Bacteria, thermophilic
description: Parageobacillus thermoglucosidasius KP 1022 is a thermophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1426
- Matching level: species
strain history
- @ref: 1117
- history: <- Y. Suzuki, KP 1022
doi: 10.13145/bacdive1431.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Parageobacillus
- species: Parageobacillus thermoglucosidasius
- full scientific name: Parageobacillus thermoglucosidasius (Suzuki 1984) Aliyu et al. 2019
synonyms
@ref synonym 20215 Parageobacillus thermoglucosidasius 20215 Bacillus thermoglucosidasius 20215 Geobacillus thermoglucosidans 20215 Geobacillus thermoglucosidasius
@ref: 1117
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Parageobacillus
species: Parageobacillus thermoglucosidasius
full scientific name: Parageobacillus thermoglucosidasius (Suzuki 1984) Aliyu et al. 2019
strain designation: KP 1022, R-32629
type strain: no
Culture and growth conditions
culture medium
- @ref: 1117
- name: BACILLUS THERMOGLUCOSIDASIUS MEDIUM (DSMZ Medium 305)
- growth: yes
- link: https://mediadive.dsmz.de/medium/305
- composition: Name: BACILLUS THERMOGLUCOSIDASIUS MEDIUM (DSMZ Medium 305) Composition: Agar 30.0 g/l Starch 10.0 g/l Peptone 5.0 g/l KH2PO4 3.0 g/l Yeast extract 3.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 1117
- growth: positive
- type: growth
- temperature: 55
- range: thermophilic
Physiology and metabolism
compound production
- @ref: 1117
- compound: exo-oligo-1,6 glucosidase
Isolation, sampling and environmental information
isolation
- @ref: 1117
- sample type: soil
- geographic location: Kyoto, Shimogamo
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_750.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_79;96_455;97_521;98_599;99_750&stattab=map
- Last taxonomy: Bacillaceae
- 16S sequence: FN428670
- Sequence Identity:
- Total samples: 14649
- soil counts: 4724
- aquatic counts: 2043
- animal counts: 5920
- plant counts: 1962
Safety information
risk assessment
- @ref: 1117
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 1117
- description: Geobacillus thermoglucosidasius partial 16S rRNA gene, strain R-32629
- accession: FN428670
- length: 1511
- database: ena
- NCBI tax ID: 1426
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Parageobacillus thermoglucosidasius DSM 2543 | GCA_014218625 | contig | ncbi | 1426 |
| 66792 | Parageobacillus thermoglucosidasius strain DSM 2543 | 1426.116 | wgs | patric | 1426 |
GC content
- @ref: 1117
- GC-content: 45.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 87.961 | no |
| gram-positive | yes | 84.201 | no |
| anaerobic | no | 97.06 | no |
| halophile | no | 93.186 | no |
| spore-forming | yes | 96.618 | no |
| thermophile | yes | 99.34 | no |
| glucose-util | yes | 91.367 | no |
| aerobic | yes | 74.319 | no |
| flagellated | yes | 82.133 | no |
| glucose-ferment | no | 91.171 | no |
External links
@ref: 1117
culture collection no.: DSM 2543
straininfo link
- @ref: 71081
- straininfo: 12256
literature
- topic: Metabolism
- Pubmed-ID: 30522433
- title: Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities.
- authors: Mohr T, Aliyu H, Kuchlin R, Zwick M, Cowan D, Neumann A, de Maayer P
- journal: BMC Genomics
- DOI: 10.1186/s12864-018-5302-9
- year: 2018
- mesh: Bacterial Proteins/genetics, Base Sequence, Carbon Monoxide/chemistry/metabolism, *Comparative Genomic Hybridization, Genetic Loci, *Genome, Bacterial, Geobacillus/*genetics, Hydrogen/*metabolism, Hydrogenase/genetics, INDEL Mutation, Multienzyme Complexes/genetics, Sequence Alignment
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 1117 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2543) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2543 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 71081 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID12256.1 | StrainInfo: A central database for resolving microbial strain identifiers |