Strain identifier

BacDive ID: 142967

Type strain: No

Species: Haemophilus intermedius subsp. intermedius

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 46395

BacDive-ID: 142967

keywords: genome sequence

description: Haemophilus intermedius subsp. intermedius CCUG 15949 is a prokaryote that was isolated from Human eye,4-month-old boy,conjunctivitis,relapse.

doi: 10.13145/bacdive142967.20230509.8.1

Name and taxonomic classification

@ref: 46395

phylum: Not assigned to order

class: Not assigned to order

order: Not assigned to order

family: Not assigned to family

genus: Haemophilus

species: Haemophilus intermedius subsp. intermedius

type strain: no

Physiology and metabolism

enzymes

@refvalueactivityec
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    46395C12:00.512
    46395C14:027.914
    46395C16:024.516
    46395C18:00.818
    46395C14:0 3OH/C16:1 ISO I9.415.485
    46395C16:1 ω7c30.215.819
    46395C18:1 ω9c3.917.769
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
46395-+---+----++--------

Isolation, sampling and environmental information

isolation

  • @ref: 46395
  • sample type: Human eye,4-month-old boy,conjunctivitis,relapse
  • sampling date: 1984-08-14
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Child
#Host Body-Site#Organ#Eye
#Infection#Patient
#Host#Human#Male

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haemophilus haemolyticus CCUG 15949GCA_006439275contigncbi726
66792Haemophilus haemolyticus strain CCUG 15949726.372wgspatric726

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno89.265no
flagellatedno93.912no
gram-positiveno98.331no
anaerobicno93.81no
aerobicno96.237no
halophileyes50.954no
spore-formingno98.556no
thermophileno97.855no
glucose-utilno56.792no
glucose-fermentno50no

External links

@ref: 46395

culture collection no.: CCUG 15949

Reference

@idauthorscataloguedoi/urltitle
46395Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 15949)https://www.ccug.se/strain?id=15949
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym