Strain identifier
BacDive ID: 142542
Type strain: 
Species: Myroides odoratimimus
NCBI tax ID(s): 883152 (strain), 76832 (species)
version 8.1 (current version)
General
@ref: 45853
BacDive-ID: 142542
keywords: genome sequence, Bacteria
description: Myroides odoratimimus CCUG 12901 is a bacterium that was isolated from Human urine.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 883152 | strain |
| 76832 | species |
doi: 10.13145/bacdive142542.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Myroides
- species: Myroides odoratimimus
- full scientific name: Myroides odoratimimus Vancanneyt et al. 1996
@ref: 45853
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Myroides
species: Myroides odoratimimus
type strain: no
Isolation, sampling and environmental information
isolation
- @ref: 45853
- sample type: Human urine
- sampling date: 1982
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Fluids | #Urine |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Myroides odoratimimus CCUG 12901 | GCA_000242095 | scaffold | ncbi | 883152 |
| 66792 | Myroides odoratimimus CCUG 12901 | 883152.3 | wgs | patric | 883152 |
| 66792 | Myroides odoratimimus CCUG 12901 | 2522572175 | draft | img | 883152 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 90.05 | no |
| flagellated | no | 93.32 | no |
| gram-positive | no | 97.98 | no |
| anaerobic | no | 99.271 | no |
| aerobic | yes | 84.076 | no |
| halophile | no | 84.754 | no |
| spore-forming | no | 94.548 | no |
| thermophile | no | 99.825 | no |
| glucose-util | yes | 69.729 | no |
| glucose-ferment | no | 90.413 | no |
External links
@ref: 45853
culture collection no.: CCUG 12901
straininfo link
- @ref: 98016
- straininfo: 7266
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 45853 | Curators of the CCUG | https://www.ccug.se/strain?id=12901 | Culture Collection University of Gothenburg (CCUG) (CCUG 12901) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 98016 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID7266.1 |