Strain identifier
version 8.1 (current version)
General
@ref: 45814
BacDive-ID: 142513
keywords: genome sequence, Bacteria
description: Streptococcus pyogenes CCUG 12752 is a bacterium that was isolated from Human skin lesion,child.
NCBI tax id
- NCBI tax id: 1314
- Matching level: species
doi: 10.13145/bacdive142513.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus pyogenes
- full scientific name: Streptococcus pyogenes Rosenbach 1884 (Approved Lists 1980)
@ref: 45814
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus pyogenes
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 92.291 | |
| 69480 | 100 | positive |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.991 |
Isolation, sampling and environmental information
isolation
- @ref: 45814
- sample type: Human skin lesion,child
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Other | #Wound |
| #Host Body-Site | #Organ | #Skin, Nail, Hair |
| #Infection | #Patient | |
| #Host | #Human | #Child |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptococcus pyogenes NCTC10870 | GCA_900459855 | contig | ncbi | 1314 |
| 66792 | Streptococcus pyogenes strain NCTC10870 | 1314.809 | wgs | patric | 1314 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 96.283 | no |
| gram-positive | yes | 93.518 | no |
| anaerobic | no | 96.671 | no |
| halophile | yes | 85.386 | no |
| spore-forming | no | 96.013 | no |
| glucose-util | yes | 88.124 | no |
| flagellated | no | 98.76 | no |
| thermophile | no | 98.854 | no |
| aerobic | no | 94.642 | no |
| glucose-ferment | yes | 82.069 | no |
External links
@ref: 45814
culture collection no.: CCUG 12752, NCTC 10870
straininfo link
- @ref: 97994
- straininfo: 57976
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 45814 | Curators of the CCUG | https://www.ccug.se/strain?id=12752 | Culture Collection University of Gothenburg (CCUG) (CCUG 12752) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 97994 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID57976.1 |