Strain identifier

BacDive ID: 14248

Type strain: Yes

Species: Sphingomonas molluscorum

Culture col. no.: DSM 19588, CIP 109223, JCM 14122, KMM 3882, NRIC 0685

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8194

BacDive-ID: 14248

DSM-Number: 19588

keywords: gram-negative, mesophilic, aerobe, Bacteria, 16S sequence, rod-shaped

description: Sphingomonas molluscorum DSM 19588 is an aerobe, mesophilic, gram-negative bacterium that was isolated from marine mollusc.

strain history

doi: 10.13145/bacdive14248.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Sphingomonadaceae
  • genus: Sphingomonas
  • species: Sphingomonas molluscorum
  • full scientific name: Sphingomonas molluscorum Romanenko et al. 2007

@ref: 8194

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas molluscorum

full scientific name: Sphingomonas molluscorum Romanenko et al. 2007

type strain: yes

Morphology

cell morphology

  • @ref: 31827
  • gram stain: negative
  • cell length: 1.0-1.5 µm
  • cell width: 0.4-0.6 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 31827
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8194TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf
33284Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)

culture temp

@refgrowthtypetemperaturerange
8194positivegrowth30mesophilic
31827positivegrowth7-37
31827positiveoptimum26.5mesophilic
33284positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 31827
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31827
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31827NaClpositivegrowth0-4 %
31827NaClpositiveoptimum2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3182722599arabinose+carbon source
3182724265gluconate+carbon source
3182717234glucose+carbon source
3182717716lactose+carbon source
3182715792malonate+carbon source
3182717306maltose+carbon source
3182737684mannose+carbon source
31827506227N-acetylglucosamine+carbon source
318274853esculin+hydrolysis

enzymes

@refvalueactivityec
31827catalase+1.11.1.6
31827cytochrome oxidase+1.9.3.1

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
8194-----+-++++-+++-----+

Isolation, sampling and environmental information

isolation

  • @ref: 8194
  • sample type: marine mollusc
  • geographic location: Sea of Japan, Peter the Great Bay
  • country: Russia
  • origin.country: RUS
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host#Invertebrates (Other)#Mollusca

Safety information

risk assessment

  • @ref: 8194
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8194
  • description: Sphingomonas molluscorum gene for 16S rRNA, partial sequence, strain: An 18 (= KMM 3882)
  • accession: AB248285
  • length: 1381
  • database: ena
  • NCBI tax ID: 418184

GC content

  • @ref: 31827
  • GC-content: 68.3

External links

@ref: 8194

culture collection no.: DSM 19588, CIP 109223, JCM 14122, KMM 3882, NRIC 0685

straininfo link

@refpassport
20218http://www.straininfo.net/strains/724557
20218http://www.straininfo.net/strains/690401
20218http://www.straininfo.net/strains/690402
20218http://www.straininfo.net/strains/690403
20218http://www.straininfo.net/strains/690404

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
8194Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19588)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19588
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2809310.1099/ijs.0.64441-0
31827Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information28093
33284Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6941