version 5.0 (current version)
General
@ref: 8194
BacDive-ID: 14248
DSM-Number: 19588
keywords: gram-negative, mesophilic, aerobe, Bacteria, 16S sequence, rod-shaped
description: Sphingomonas molluscorum DSM 19588 is an aerobe, mesophilic, gram-negative bacterium that was isolated from marine mollusc.
strain history
doi: 10.13145/bacdive14248.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingomonadaceae
- genus: Sphingomonas
- species: Sphingomonas molluscorum
- full scientific name: Sphingomonas molluscorum Romanenko et al. 2007
@ref: 8194
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas molluscorum
full scientific name: Sphingomonas molluscorum Romanenko et al. 2007
type strain: yes
Morphology
cell morphology
- @ref: 31827
- gram stain: negative
- cell length: 1.0-1.5 µm
- cell width: 0.4-0.6 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 31827
- production: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 8194 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf | |
| 33284 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 8194 | positive | growth | 30 | mesophilic |
| 31827 | positive | growth | 7-37 | |
| 31827 | positive | optimum | 26.5 | mesophilic |
| 33284 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 31827
- oxygen tolerance: aerobe
spore formation
- @ref: 31827
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31827 | NaCl | positive | growth | 0-4 % |
| 31827 | NaCl | positive | optimum | 2 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31827 | 22599 | arabinose | + | carbon source |
| 31827 | 24265 | gluconate | + | carbon source |
| 31827 | 17234 | glucose | + | carbon source |
| 31827 | 17716 | lactose | + | carbon source |
| 31827 | 15792 | malonate | + | carbon source |
| 31827 | 17306 | maltose | + | carbon source |
| 31827 | 37684 | mannose | + | carbon source |
| 31827 | 506227 | N-acetylglucosamine | + | carbon source |
| 31827 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31827 | catalase | + | 1.11.1.6 |
| 31827 | cytochrome oxidase | + | 1.9.3.1 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8194 | - | - | - | - | - | + | - | + | + | + | + | - | + | + | + | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 8194
- sample type: marine mollusc
- geographic location: Sea of Japan, Peter the Great Bay
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Host | #Invertebrates (Other) | #Mollusca |
Safety information
risk assessment
- @ref: 8194
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8194
- description: Sphingomonas molluscorum gene for 16S rRNA, partial sequence, strain: An 18 (= KMM 3882)
- accession: AB248285
- length: 1381
- database: ena
- NCBI tax ID: 418184
GC content
- @ref: 31827
- GC-content: 68.3
External links
@ref: 8194
culture collection no.: DSM 19588, CIP 109223, JCM 14122, KMM 3882, NRIC 0685
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/724557 |
| 20218 | http://www.straininfo.net/strains/690401 |
| 20218 | http://www.straininfo.net/strains/690402 |
| 20218 | http://www.straininfo.net/strains/690403 |
| 20218 | http://www.straininfo.net/strains/690404 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 8194 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19588) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19588 | ||||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 28093 | 10.1099/ijs.0.64441-0 | ||||||
| 31827 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28093 | |||
| 33284 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6941 |