Strain identifier

BacDive ID: 142453

Type strain: No

Species: Francisella philomiragia

NCBI tax ID(s): 1088875 (strain), 28110 (species)

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General

@ref: 45750

BacDive-ID: 142453

keywords: Bacteria, mesophilic

description: Francisella philomiragia CCUG 12603 is a mesophilic bacterium that was isolated from Human abscess,14-yr-old boy,leg.

NCBI tax id

NCBI tax idMatching level
1088875strain
28110species

doi: 10.13145/bacdive142453.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Beggiatoales
  • family: Francisellaceae
  • genus: Francisella
  • species: Francisella philomiragia
  • full scientific name: Francisella philomiragia (Jensen et al. 1969) Hollis et al. 1990

  • synonyms

    • @ref: 20215
    • synonym: Yersinia philomiragia

@ref: 45750

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Thiotrichales

family: Francisellaceae

genus: Francisella

species: Francisella philomiragia

type strain: no

Morphology

colony morphology

  • @ref: 45750
  • incubation period: 2-3 days

Culture and growth conditions

culture temp

  • @ref: 45750
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
6836935581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6837735581indole-
6836935581indole-

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase+2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase+3.2.1.23
68377alkaline phosphatase+3.1.3.1
68377lipase+
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase+3.5.2.6
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    45750C10:025.810
    45750C12:01.312
    45750C14:021.414
    45750C16:04.916
    45750C18:02.818
    45750C20:01.520
    4575011 methyl 18:1 ω7c0.218.081
    45750C16:0 3OH5.517.52
    45750C16:0 aldehyde0.614.949
    45750C17:0 3OH0.318.535
    45750C18:0 3OH20.119.551
    45750C18:1 ω7c /12t/9t0.517.824
    45750C18:1 ω9c1217.769
    45750C20:2 ω6,9c0.819.735
    45750Unidentified0.615.809
    45750Unidentified0.717.71
    45750Unidentified0.517.941
    45750unk. 18.846/19:1 ω6c0.618.846
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
45750--++-+----++-+---+--

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
45750------++--+---------+

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
45750++++---+++-+-

Isolation, sampling and environmental information

isolation

  • @ref: 45750
  • sample type: Human abscess,14-yr-old boy,leg
  • sampling date: 1982-08-24
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Child
#Host#Human#Male
#Host Body-Site#Oral cavity and airways#Throat
#Host Body-Site#Other#Abscess

External links

@ref: 45750

culture collection no.: CCUG 12603

straininfo link

  • @ref: 97966
  • straininfo: 54015

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
45750Curators of the CCUGhttps://www.ccug.se/strain?id=12603Culture Collection University of Gothenburg (CCUG) (CCUG 12603)
68369Automatically annotated from API 20NE
68377Automatically annotated from API NH
68382Automatically annotated from API zym
97966Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID54015.1