Strain identifier
version 8.1 (current version)
General
@ref: 45687
BacDive-ID: 142405
keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-negative
description: Mannheimia glucosida CCUG 12394 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Lamb.
NCBI tax id
- NCBI tax id: 85401
- Matching level: species
doi: 10.13145/bacdive142405.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Mannheimia
- species: Mannheimia glucosida
- full scientific name: Mannheimia glucosida Angen et al. 1999
@ref: 45687
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Mannheimia
species: Mannheimia glucosida
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.991
Culture and growth conditions
culture temp
- @ref: 45687
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 45687
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.997 |
Isolation, sampling and environmental information
isolation
- @ref: 45687
- sample type: Lamb
- geographic location: Oslo
- country: Norway
- origin.country: NOR
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Mammals
- Cat3: #Caprinae (Sheep/Goat)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mannheimia haemolytica strain NCTC10208 | 75985.158 | wgs | patric | 75985 |
| 66792 | Mannheimia haemolytica NCTC 10208 | GCA_023516295 | complete | ncbi | 75985 |
| 66792 | Mannheimia haemolytica NCTC10208 | GCA_900453405 | contig | ncbi | 75985 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 96.497 | no |
| gram-positive | no | 98.159 | no |
| anaerobic | no | 98.311 | yes |
| aerobic | no | 93.421 | yes |
| halophile | no | 55.453 | no |
| spore-forming | no | 98.6 | no |
| motile | no | 89.535 | no |
| glucose-ferment | no | 51.109 | no |
| thermophile | no | 97.935 | yes |
| glucose-util | no | 58.232 | no |
External links
@ref: 45687
culture collection no.: CCUG 12394, ATCC 29701, NCTC 10208
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 45687 | Curators of the CCUG | https://www.ccug.se/strain?id=12394 | Culture Collection University of Gothenburg (CCUG) (CCUG 12394) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |