Strain identifier

BacDive ID: 142318

Type strain: No

Species: Campylobacter showae

NCBI tax ID(s): 204 (species)

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General

@ref: 45584

BacDive-ID: 142318

keywords: Bacteria, anaerobe, mesophilic

description: Campylobacter showae CCUG 11641 is an anaerobe, mesophilic bacterium that was isolated from Human dental root canal,apical periodontitis.

NCBI tax id

  • NCBI tax id: 204
  • Matching level: species

doi: 10.13145/bacdive142318.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter showae
  • full scientific name: Campylobacter showae Etoh et al. 1993

@ref: 45584

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter showae

type strain: no

Culture and growth conditions

culture temp

  • @ref: 45584
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 45584
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316199urea-hydrolysis
6837317632nitrate-reduction
68373606565hippurate-hydrolysis
6837378019triphenyltetrazolium chloride+reduction
6837317634D-glucose-assimilation
6837330031succinate-assimilation
6837330089acetate-assimilation
6837317272propionate-assimilation
6837325115malate-assimilation
6837316947citrate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

  • @ref: 68373
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
68373catalase-1.11.1.6
68373alkaline phosphatase-3.1.3.1
68373L-aspartate arylamidase+3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase-2.3.2.2
68373esterase+
68373urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    45584C12:09.512
    45584C13:00.313
    45584C14:011.314
    45584C15:00.315
    45584C16:029.816
    45584C18:01.618
    45584C13:0 ISO 2OH0.713.814
    45584C14:0 3OH/C16:1 ISO I3.915.485
    45584C16:0 3OH1.517.52
    45584C16:1 ω7c1115.819
    45584C18:1 ω7c /12t/9t21.417.824
    45584C18:1 ω9c1.117.769
    45584C18:2 ω6,9c/C18:0 ANTE7.117.724
    45584Unidentified0.713.92
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
45584--+-----------------

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
45584--+--+--+------------

Isolation, sampling and environmental information

isolation

  • @ref: 45584
  • sample type: Human dental root canal,apical periodontitis
  • sampling date: 1970
  • geographic location: Umeå
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Root (Tooth)
#Infection#Patient

External links

@ref: 45584

culture collection no.: CCUG 11641, LMG 8543

straininfo link

  • @ref: 97857
  • straininfo: 1557

literature

  • topic: Pathogenicity
  • Pubmed-ID: 12558939
  • title: Detection of Campylobacter rectus in periodontitis sites by monoclonal antibodies.
  • authors: Ihara H, Miura T, Kato T, Ishihara K, Nakagawa T, Yamada S, Okuda K
  • journal: J Periodontal Res
  • DOI: 10.1034/j.1600-0765.2003.01627.x
  • year: 2003
  • mesh: *Antibodies, Monoclonal/immunology, Antibody Specificity, Antigens, Surface/immunology, Bacterial Outer Membrane Proteins/immunology, *Bacterial Proteins, Campylobacter/*classification/immunology/pathogenicity, Chi-Square Distribution, Dental Plaque/microbiology, Female, Gingival Hemorrhage/microbiology, Humans, Immunoblotting, Male, *Membrane Glycoproteins, Middle Aged, Periodontal Pocket/microbiology, Periodontitis/*microbiology, Sensitivity and Specificity, Virulence
  • topic2: Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
45584Curators of the CCUGhttps://www.ccug.se/strain?id=11641Culture Collection University of Gothenburg (CCUG) (CCUG 11641)
68373Automatically annotated from API CAM
68382Automatically annotated from API zym
97857Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID1557.1