Strain identifier

BacDive ID: 1423

Type strain: No

Species: Geobacillus thermocatenulatus

Strain Designation: Ga

Strain history: <- T. N. Nazina; Ga <- E. V. Lebedeva

NCBI tax ID(s): 33938 (species)

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General

@ref: 5886

BacDive-ID: 1423

DSM-Number: 15378

keywords: 16S sequence, Bacteria, thermophilic

description: Geobacillus thermocatenulatus Ga is a thermophilic bacterium that was isolated from hot spring.

NCBI tax id

  • NCBI tax id: 33938
  • Matching level: species

strain history

  • @ref: 5886
  • history: <- T. N. Nazina; Ga <- E. V. Lebedeva

doi: 10.13145/bacdive1423.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Geobacillus
  • species: Geobacillus thermocatenulatus
  • full scientific name: Geobacillus thermocatenulatus (Golovacheva et al. 1991) Nazina et al. 2001

  • synonyms

    @refsynonym
    20215Geobacillus gargensis
    20215Bacillus thermocatenulatus

@ref: 5886

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Geobacillus

species: Geobacillus thermocatenulatus

full scientific name: Geobacillus thermocatenulatus (Golovacheva et al. 1991) Nazina et al. 2001 emend. Dinsdale et al. 2011

strain designation: Ga

type strain: no

Culture and growth conditions

culture medium

  • @ref: 5886
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 5886
  • growth: positive
  • type: growth
  • temperature: 55
  • range: thermophilic

Isolation, sampling and environmental information

isolation

  • @ref: 5886
  • sample type: hot spring
  • geographic location: Lake Baikal area
  • country: Russia
  • origin.country: RUS
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_882.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_79;96_191;97_207;98_231;99_882&stattab=map
  • Last taxonomy: Geobacillus
  • 16S sequence: FR749979
  • Sequence Identity:
  • Total samples: 794
  • soil counts: 50
  • aquatic counts: 158
  • animal counts: 556
  • plant counts: 30

Safety information

risk assessment

  • @ref: 5886
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Geobacillus gargensis strain DSM 15378 16S-23S ribosomal RNA intergenic spacer and tRNA-Ile gene, partial sequence; and tRNA-Ala gene, complete sequenceEU157942397ena33938
20218Geobacillus gargensis partial 16S rRNA gene, type strain DSM 15378T, clone 1FR7499791550ena33938

GC content

  • @ref: 5886
  • GC-content: 52.9

External links

@ref: 5886

culture collection no.: DSM 15378, VKM B-2300

straininfo link

  • @ref: 71073
  • straininfo: 134423

literature

  • topic: Phylogeny
  • Pubmed-ID: 15545427
  • title: Geobacillus gargensis sp. nov., a novel thermophile from a hot spring, and the reclassification of Bacillus vulcani as Geobacillus vulcani comb. nov.
  • authors: Nazina TN, Lebedeva EV, Poltaraus AB, Tourova TP, Grigoryan AA, Sokolova DS, Lysenko AM, Osipov GA
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02932-0
  • year: 2004
  • mesh: Aerobiosis, Bacillaceae/*classification/cytology/*isolation & purification/physiology, Bacterial Typing Techniques, Carbohydrate Metabolism, Carboxylic Acids/metabolism, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis/isolation & purification, Genes, rRNA, Gentian Violet, Glycerol/metabolism, Hot Springs/*microbiology, Hot Temperature, Hydrocarbons/metabolism, Lactose/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phenazines, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Ribose/metabolism, Russia, Sequence Analysis, DNA, Temperature, *Water Microbiology
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5886Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15378)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15378
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71073Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID134423.1StrainInfo: A central database for resolving microbial strain identifiers