Strain identifier

BacDive ID: 142180

Type strain: No

Species: Escherichia coli

NCBI tax ID(s): 562 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 45437

BacDive-ID: 142180

keywords: Bacteria, genome sequence

description: Escherichia coli CCUG 11317 is a bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

doi: 10.13145/bacdive142180.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 45437

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837430911sorbitol+builds acid from
6837417057cellobiose-builds acid from
6837417268myo-inositol-builds acid from
6837462345L-rhamnose+builds acid from
6837427082trehalose+builds acid from
6837418333D-arabitol-builds acid from
6837430849L-arabinose+builds acid from
6837417992sucrose-builds acid from
6837417634D-glucose+builds acid from
6837427897tryptophan+energy source
6837415792malonate-assimilation
6837418394palatinose-builds acid from
6837415963ribitol-builds acid from
6837417306maltose-builds acid from
6837416899D-mannitol+builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837418024D-galacturonic acid+builds acid from
6837418403L-arabitol-builds acid from
6837416199urea-hydrolysis
6837425094lysine-degradation
6837429016arginine-hydrolysis
6837418257ornithine-degradation

metabolite production

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase+3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase-
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
45437-----+--+-+-----+-++-+--+++--+--

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Escherichia coli NCTC9011GCA_900448765contigncbi562
66792Escherichia coli strain NCTC9011562.34197wgspatric562

External links

@ref: 45437

culture collection no.: CCUG 11317, ATCC 23507, NCTC 9011

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
45437Curators of the CCUGhttps://www.ccug.se/strain?id=11317Culture Collection University of Gothenburg (CCUG) (CCUG 11317)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68374Automatically annotated from API ID32E