Strain identifier

BacDive ID: 142149

Type strain: No

Species: Haemophilus intermedius subsp. intermedius

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General

@ref: 45391

BacDive-ID: 142149

keywords: genome sequence

description: Haemophilus intermedius subsp. intermedius CCUG 11096 is a prokaryote that was isolated from Human pleural fluid,69-yr-old male patient.

doi: 10.13145/bacdive142149.20230509.8.1

Name and taxonomic classification

@ref: 45391

phylum: Not assigned to order

class: Not assigned to order

order: Not assigned to order

family: Not assigned to family

genus: Haemophilus

species: Haemophilus intermedius subsp. intermedius

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837717992sucrose+builds acid from
6837718257ornithine-degradation
6837716199urea+hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase+3.1.3.1
68377lipase-
68377urease+3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
45391-+---+----+---------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
45391-+--+-+-+----

Isolation, sampling and environmental information

isolation

  • @ref: 45391
  • sample type: Human pleural fluid,69-yr-old male patient
  • sampling date: 1981-05-20
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Oral cavity and Airways#Pleural fluid
#Host Body-Site#Oral cavity and airways#Lung
#Infection#Patient

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haemophilus haemolyticus CCUG 11096GCA_006439155contigncbi726
66792Haemophilus haemolyticus strain CCUG 11096726.367wgspatric726

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno89.572no
flagellatedno94.862no
gram-positiveno98.48no
anaerobicno93.296no
aerobicno96.531no
halophileyes50.938no
spore-formingno98.528no
thermophileno98.491no
glucose-utilno60.319no
glucose-fermentno51.628no

External links

@ref: 45391

culture collection no.: CCUG 11096

Reference

@idauthorscataloguedoi/urltitle
45391Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 11096)https://www.ccug.se/strain?id=11096
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
68382Automatically annotated from API zym