Strain identifier

BacDive ID: 14212

Type strain: No

Species: Sphingomonas sp.

Strain Designation: 10-1

Strain history: <- P. A. Willumsen; 10-1

NCBI tax ID(s): 28214 (species)

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General

@ref: 4652

BacDive-ID: 14212

DSM-Number: 12247

keywords: Bacteria

description: Sphingomonas sp. 10-1 is a bacterium that was isolated from contaminated soil.

NCBI tax id

  • NCBI tax id: 28214
  • Matching level: species

strain history

  • @ref: 4652
  • history: <- P. A. Willumsen; 10-1

doi: 10.13145/bacdive14212.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Sphingomonadaceae
  • genus: Sphingomonas
  • species: Sphingomonas sp.
  • full scientific name: Sphingomonas Yabuuchi et al. 1990

@ref: 4652

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas sp.

full scientific name: Sphingomonas sp.

strain designation: 10-1

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4652NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
4652PLATES WITH FLUORANTHENE (DSMZ Medium 462a)yeshttps://mediadive.dsmz.de/medium/462aName: PLATES WITH FLUORANTHENE (DSMZ Medium 462a; with strain-specific modifications) Composition: Na2HPO4 2.44 g/l Fluoranthene 2.0 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l Yeast extract 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l Pyridoxamine 0.000125 g/l ZnSO4 x 7 H2O 0.0001 g/l Vitamin B12 5e-05 g/l Nicotinic acid 5e-05 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l Thiamine-HCl x 2 H2O 2.5e-05 g/l p-Aminobenzoate 2.5e-05 g/l NiCl2 x 6 H2O 2e-05 g/l Calcium pantothenate 1.25e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Biotin 5e-06 g/l Distilled water

culture temp

  • @ref: 4652
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
4652-----+-+++--+----+--+

Isolation, sampling and environmental information

isolation

  • @ref: 4652
  • sample type: contaminated soil
  • geographic location: Port Newark
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Terrestrial#Soil

External links

@ref: 4652

culture collection no.: DSM 12247

straininfo link

  • @ref: 83371
  • straininfo: 49255

literature

  • topic: Metabolism
  • Pubmed-ID: 22921652
  • title: Comparing the desorption and biodegradation of low concentrations of phenanthrene sorbed to activated carbon, biochar and compost.
  • authors: Marchal G, Smith KE, Rein A, Winding A, Trapp S, Karlson UG
  • journal: Chemosphere
  • DOI: 10.1016/j.chemosphere.2012.07.048
  • year: 2012
  • mesh: Adsorption, Biodegradation, Environmental, Charcoal/*chemistry, Environmental Restoration and Remediation/*methods, Phenanthrenes/analysis/*chemistry, Soil/*chemistry, Soil Microbiology, Soil Pollutants/analysis/*chemistry

Reference

@idauthorscataloguedoi/urltitle
4652Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12247)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12247
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68369Automatically annotated from API 20NE
83371Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49255.1StrainInfo: A central database for resolving microbial strain identifiers