Strain identifier
version 8.1 (current version)
General
@ref: 45330
BacDive-ID: 142098
keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-negative
description: Campylobacter jejuni CCUG 10772 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Pig placenta.
NCBI tax id
- NCBI tax id: 197
- Matching level: species
doi: 10.13145/bacdive142098.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter jejuni
- full scientific name: Campylobacter jejuni (Jones et al. 1931) Véron and Chatelain 1973 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Vibrio jejuni
@ref: 45330
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter jejuni
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.993
Culture and growth conditions
culture temp
- @ref: 45330
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 45330
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 99 |
| 69480 | no | 99.998 |
Isolation, sampling and environmental information
isolation
- @ref: 45330
- sample type: Pig placenta
- country: Belgium
- origin.country: BEL
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Suidae (Pig,Swine) |
| #Host Body-Site | #Urogenital tract |
Sequence information
Genome sequences
- @ref: 66792
- description: Campylobacter coli strain NCTC11353
- accession: 195.752
- assembly level: wgs
- database: patric
- NCBI tax ID: 195
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 99 | no |
| motile | yes | 90.353 | no |
| gram-positive | no | 98.644 | no |
| anaerobic | no | 89.894 | no |
| aerobic | no | 93.993 | yes |
| halophile | no | 89.69 | no |
| spore-forming | no | 95.444 | no |
| glucose-util | no | 87.817 | no |
| flagellated | yes | 61.256 | no |
| thermophile | no | 78.705 | no |
| glucose-ferment | no | 88.556 | no |
External links
@ref: 45330
culture collection no.: CCUG 10772, NCTC 11353
straininfo link
- @ref: 97671
- straininfo: 1366
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 45330 | Curators of the CCUG | https://www.ccug.se/strain?id=10772 | Culture Collection University of Gothenburg (CCUG) (CCUG 10772) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 97671 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID1366.1 |