Strain identifier
BacDive ID: 14208
Type strain: 
Species: Sphingomonas sp.
Strain Designation: BF2
Strain history: <- P. Hugenholtz, Univ. Queensland, Brisbane; BF2
NCBI tax ID(s): 28214 (species)
version 8.1 (current version)
General
@ref: 3528
BacDive-ID: 14208
DSM-Number: 9260
keywords: 16S sequence, Bacteria, mesophilic
description: Sphingomonas sp. BF2 is a mesophilic bacterium that was isolated from Cooling coils in an air-handling system.
NCBI tax id
- NCBI tax id: 28214
- Matching level: species
strain history
- @ref: 3528
- history: <- P. Hugenholtz, Univ. Queensland, Brisbane; BF2
doi: 10.13145/bacdive14208.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingomonadaceae
- genus: Sphingomonas
- species: Sphingomonas sp.
- full scientific name: Sphingomonas Yabuuchi et al. 1990
@ref: 3528
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas sp.
full scientific name: Sphingomonas sp.
strain designation: BF2
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 3528 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
| 3528 | R3 A MEDIUM (DSMZ Medium 1153) | yes | https://mediadive.dsmz.de/medium/1153 | Name: R3 A MEDIUM (DSMZ Medium 1153) Composition: Agar 15.0 g/l Casamino acids 1.0 g/l Starch 1.0 g/l Glucose 1.0 g/l Proteose peptone 1.0 g/l Yeast extract 1.0 g/l K2HPO4 0.6 g/l Sodium pyruvate 0.5 g/l MgSO4 x 7 H2O 0.1 g/l Distilled water |
culture temp
- @ref: 3528
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | + | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | + | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | + | hydrolysis |
| 68369 | 4853 | esculin | + | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | + | |
| 68369 | beta-glucosidase | + | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3528 | - | - | - | - | - | + | + | + | + | + | + | - | + | + | + | - | - | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 3528
- sample type: Cooling coils in an air-handling system
- geographic location: Queensland, Brisbane
- country: Australia
- origin.country: AUS
- continent: Australia and Oceania
isolation source categories
- Cat1: #Engineered
- Cat2: #Built environment
- Cat3: #Air conditioner
Sequence information
16S sequences
- @ref: 3528
- description: Sphingomonas sp. BF2 16S rRNA gene, strain BF2
- accession: X89905
- length: 1412
- database: ena
- NCBI tax ID: 194438
External links
@ref: 3528
culture collection no.: DSM 9260
straininfo link
- @ref: 83367
- straininfo: 405034
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3528 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9260) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9260 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 68369 | Automatically annotated from API 20NE | |||
| 83367 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID405034.1 | StrainInfo: A central database for resolving microbial strain identifiers |