Strain identifier

BacDive ID: 141993

Type strain: No

Species: Shigella flexneri

NCBI tax ID(s): 623 (species)

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General

@ref: 45202

BacDive-ID: 141993

keywords: Bacteria

description: Shigella flexneri CCUG 9566 is a bacterium that was isolated from Human dysentery,first case in Flanders.

NCBI tax id

  • NCBI tax id: 623
  • Matching level: species

doi: 10.13145/bacdive141993.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Shigella
  • species: Shigella flexneri
  • full scientific name: Shigella flexneri Castellani and Chalmers 1919 (Approved Lists 1980)

@ref: 45202

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Shigella

species: Shigella flexneri

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837418257ornithine-degradation
6837429016arginine-hydrolysis
6837425094lysine-degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid+builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol-builds acid from
6837417306maltose-builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan+energy source
6837417634D-glucose+builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose-builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose-builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol-builds acid from

metabolite production

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase+3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase-3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase-
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    45202C12:03.512
    45202C13:0113
    45202C14:05.414
    45202C15:05.115
    45202C16:023.916
    45202C17:04.117
    45202C12:0 ALDE ?1.310.915
    45202C13:0 3OH/C15:1 i I/H1.214.469
    45202C14:0 3OH/C16:1 ISO I5.715.485
    45202C16:1 ω7c7.915.819
    45202C17:0 CYCLO13.516.888
    45202C18:1 ω7c /12t/9t22.917.824
    45202C18:2 ω6,9c/C18:0 ANTE117.724
    45202C19:0 CYCLO ω8c3.518.9
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
45202-----+--+-------+--+----+-------

Isolation, sampling and environmental information

isolation

  • @ref: 45202
  • sample type: Human dysentery,first case in Flanders
  • sampling date: 1914
  • geographic location: Flanders
  • country: Belgium
  • origin.country: BEL
  • continent: Europe

isolation source categories

Cat1Cat2
#Host#Human
#Infection#Disease
#Infection#Patient

External links

@ref: 45202

culture collection no.: CCUG 9566, NCTC 1

straininfo link

  • @ref: 97576
  • straininfo: 57018

literature

  • topic: Pathogenicity
  • Pubmed-ID: 25441199
  • title: The extant World War 1 dysentery bacillus NCTC1: a genomic analysis.
  • authors: Baker KS, Mather AE, McGregor H, Coupland P, Langridge GC, Day M, Deheer-Graham A, Parkhill J, Russell JE, Thomson NR
  • journal: Lancet
  • DOI: 10.1016/S0140-6736(14)61789-X
  • year: 2014
  • mesh: Anti-Infective Agents/pharmacology, Base Sequence, Drug Resistance, Bacterial/genetics, Dysentery, Bacillary/drug therapy/*microbiology, Evolution, Molecular, Genome, Bacterial/*genetics, Humans, Phylogeny, Shigella flexneri/drug effects/*genetics, *World War I
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
45202Curators of the CCUGhttps://www.ccug.se/strain?id=9566Culture Collection University of Gothenburg (CCUG) (CCUG 9566)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68374Automatically annotated from API ID32E
97576Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID57018.1