Strain identifier

BacDive ID: 14183

Type strain: Yes

Species: Sphingobium chungbukense

Strain Designation: DJ77

Culture col. no.: DSM 16638, CIP 107741, IMSNU 11152, KCTC 2955, CCUG 52897, JCM 11454

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6541

BacDive-ID: 14183

DSM-Number: 16638

keywords: Bacteria, 16S sequence, genome sequence, aerobe, mesophilic

description: Sphingobium chungbukense DJ77 is an aerobe, mesophilic bacterium that was isolated from contaminated sediment.

strain history: <- KCTC <- Y.-C. Kim; DJ77

doi: 10.13145/bacdive14183.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Sphingomonadaceae
  • genus: Sphingobium
  • species: Sphingobium chungbukense
  • full scientific name: Sphingobium chungbukense (Kim et al. 2000) Pal et al. 2005
  • synonyms

    • @ref: 20215
    • synonym: Sphingomonas chungbukensis

@ref: 6541

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Sphingomonadaceae

genus: Sphingobium

species: Sphingobium chungbukense

full scientific name: Sphingobium chungbukense (Kim et al. 2000) Pal et al. 2005

strain designation: DJ77

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6541MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457), with toluene via incubation atmosphereyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium457.pdf
6541CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium220.pdf
34204MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
6541positivegrowth28mesophilic
34204positivegrowth30mesophilic
59715positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 59715
  • oxygen tolerance: aerobe

Isolation, sampling and environmental information

isolation

  • @ref: 6541
  • sample type: contaminated sediment
  • geographic location: near Taejon
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Terrestrial#Sediment

Safety information

risk assessment

  • @ref: 6541
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6541
  • description: Sphingomonas chungbukensis strain DJ77 16S ribosomal RNA gene, complete sequence
  • accession: AF159257
  • length: 1502
  • database: ena
  • NCBI tax ID: 56193

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sphingobium chungbukense DJ77GCA_001005725contigncbi56193
66792Sphingobium chungbukense strain DJ7756193.3wgspatric56193
66792Sphingobium chungbukense strain DJ7756193.4plasmidpatric56193

GC content

  • @ref: 6541
  • GC-content: 63

External links

@ref: 6541

culture collection no.: DSM 16638, CIP 107741, IMSNU 11152, KCTC 2955, CCUG 52897, JCM 11454

straininfo link

@refpassport
20218http://www.straininfo.net/strains/381540
20218http://www.straininfo.net/strains/337151
20218http://www.straininfo.net/strains/303818
20218http://www.straininfo.net/strains/314538

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6541Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16638)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16638
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34204Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5210
59715Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 52897)https://www.ccug.se/strain?id=52897
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)