Strain identifier
version 9.1 (current version)
General
@ref: 44907
BacDive-ID: 141765
keywords: genome sequence, Bacteria, Gram-negative
description: Edwardsiella tarda CCUG 6517 is a Gram-negative bacterium of the family Hafniaceae.
NCBI tax id
- NCBI tax id: 636
- Matching level: species
doi: 10.13145/bacdive141765.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Hafniaceae
- genus: Edwardsiella
- species: Edwardsiella tarda
- full scientific name: Edwardsiella tarda Ewing and McWhorter 1965 (Approved Lists 1980)
synonyms
@ref synonym 20215 Paracolobactrum anguillimortiferum 20215 Edwardsiella anguillimortifera
@ref: 44907
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Hafniaceae
genus: Edwardsiella
species: Edwardsiella tarda
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 100
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 91.616 |
| 69481 | no | 100 |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Edwardsiella tarda NCTC10397 | GCA_900447385 | contig | ncbi | 636 |
| 66792 | Edwardsiella tarda strain NCTC10397 | 636.29 | wgs | patric | 636 |
| 66792 | Edwardsiella tarda NCTC 10397 | 2852442030 | draft | img | 636 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 84.893 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.616 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 78.151 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.643 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 69.85 | no |
External links
@ref: 44907
culture collection no.: CCUG 6517, NCTC 10397
straininfo link
- @ref: 97391
- straininfo: 45716
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 44907 | Curators of the CCUG | https://www.ccug.se/strain?id=6517 | Culture Collection University of Gothenburg (CCUG) (CCUG 6517) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 97391 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID45716.1 |