Strain identifier
BacDive ID: 141218
Type strain:
Species: Pseudomonas stutzeri
NCBI tax ID(s): 203192 (species), 316 (species)
version 8.1 (current version)
General
@ref: 44148
BacDive-ID: 141218
keywords: genome sequence, Bacteria, motile
description: Pseudomonas stutzeri CCUG 227 is a motile bacterium that was isolated from Chronic leg ulcer.
NCBI tax id
NCBI tax id | Matching level |
---|---|
203192 | species |
316 | species |
doi: 10.13145/bacdive141218.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas stutzeri
- full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)
synonyms
@ref synonym 20215 Stutzerimonas chloritidismutans 20215 Pseudomonas perfectomarinus 20215 Bacterium stutzeri 20215 Pseudomonas kunmingensis 20215 Pseudomonas chloritidismutans 20215 Stutzerimonas kunmingensis 20215 Stutzerimonas stutzeri 20215 Stutzerimonas perfectomarina 20215 Pseudomonas perfectomarina
@ref: 44148
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas stutzeri
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 98.744 | |
69480 | 100 | negative |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.975 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 44148 C10:0 0.2 10 44148 C12:0 7.3 12 44148 C14:0 0.9 14 44148 C16:0 18 16 44148 C18:0 0.4 18 44148 C10:0 3OH 3.2 11.423 44148 C11:0 ISO 3OH 0.9 12.09 44148 C12:0 2OH 0.1 13.178 44148 C12:0 3OH 3.4 13.455 44148 C16:1 ω7c 24.4 15.819 44148 C17:0 CYCLO 0.8 16.888 44148 C17:0 iso 0.4 16.629 44148 C18:1 ω7c /12t/9t 38.5 17.824 44148 C19:0 CYCLO ω8c 1.4 18.9 44148 unknown 11.798 0.2 11.798 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
- @ref: 44148
- sample type: Chronic leg ulcer
isolation source categories
- Cat1: #Host Body-Site
- Cat2: #Limb
- Cat3: #Leg
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Stutzerimonas stutzeri NCTC10450 | GCA_900636845 | complete | ncbi | 316 |
66792 | Pseudomonas stutzeri strain NCTC10450 | 316.449 | complete | patric | 316 |
66792 | Pseudomonas stutzeri NCTC10450 | 2875531041 | complete | img | 316 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | yes | 90.512 | no |
gram-positive | no | 98.871 | no |
anaerobic | no | 97.573 | no |
aerobic | yes | 92.886 | no |
halophile | no | 80.72 | no |
spore-forming | no | 94.613 | no |
thermophile | no | 99.671 | no |
glucose-util | yes | 89.819 | no |
motile | yes | 90.332 | no |
glucose-ferment | no | 91.981 | no |
External links
@ref: 44148
culture collection no.: CCUG 227, NCTC 10450
straininfo link
- @ref: 96921
- straininfo: 56608
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
44148 | Curators of the CCUG | https://www.ccug.se/strain?id=227 | Culture Collection University of Gothenburg (CCUG) (CCUG 227) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
96921 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID56608.1 |