Strain identifier

BacDive ID: 141215

Type strain: No

Species: Kurthia zopfii

NCBI tax ID(s): 1650 (species)

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General

@ref: 44142

BacDive-ID: 141215

keywords: genome sequence, Bacteria, Gram-positive

description: Kurthia zopfii CCUG 220 is a Gram-positive bacterium of the family Caryophanaceae.

NCBI tax id

  • NCBI tax id: 1650
  • Matching level: species

doi: 10.13145/bacdive141215.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Kurthia
  • species: Kurthia zopfii
  • full scientific name: Kurthia zopfii (Kurth 1883) Trevisan 1885 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium zopfii

@ref: 44142

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Planococcaceae

genus: Kurthia

species: Kurthia zopfii

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    44142C14:03.114
    44142C15:00.215
    44142C16:05.416
    44142C18:01.218
    44142C13:0 ANTEISO0.312.701
    44142C13:0 iso0.812.612
    44142C14:0 ISO10.213.618
    44142C15:0 ANTEISO29.814.711
    44142C15:0 ISO34.614.621
    44142C16:0 iso3.215.626
    44142C16:1 ω11c3.215.757
    44142C16:1 ω7c alcohol1.515.386
    44142C17:0 anteiso1.116.722
    44142C17:0 iso0.816.629
    44142C17:1 ISO I/C16:0 DMA0.316.481
    44142C18:1 ω9c2.717.769
    44142C18:2 ω6,9c/C18:0 ANTE1.617.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlRIBXYLMANMALLACSACGLYGCAT
44142-+-+---------------+

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kurthia zopfii NCTC404GCA_900637935completencbi1650
66792Kurthia zopfii strain NCTC4041650.8completepatric1650

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes89no
flagellatedyes64.786no
gram-positiveyes93.238no
anaerobicno98.905no
aerobicyes93.699no
halophileno70.012no
spore-formingyes79.008no
thermophileno98.514no
glucose-utilyes75.891no
motileyes85.159no
glucose-fermentno86.784no

External links

@ref: 44142

culture collection no.: CCUG 220, ATCC 10538, NCTC 404

straininfo link

  • @ref: 96919
  • straininfo: 8775

literature

  • topic: Phylogeny
  • Pubmed-ID: 6771494
  • title: [Morphologic and physiologic-biochemical characteristics of Kurthia zopfii].
  • authors: Belikova VL, Cherevach NV, Baryshnikova LM, Kalakutskii LV
  • journal: Mikrobiologiia
  • year: 1980
  • mesh: Actinomycetales/classification/*growth & development, Genetic Variation, Species Specificity, Temperature

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44142Curators of the CCUGhttps://www.ccug.se/strain?id=220Culture Collection University of Gothenburg (CCUG) (CCUG 220)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68379Automatically annotated from API Coryne
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
96919Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID8775.1