Strain identifier

BacDive ID: 141185

Type strain: No

Species: Pseudomonas fragi

NCBI tax ID(s): 296 (species)

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General

@ref: 44106

BacDive-ID: 141185

keywords: Bacteria, aerobe

description: Pseudomonas fragi CCUG 45 is an aerobe bacterium that was isolated from Human feces,3-yr-old child.

NCBI tax id

  • NCBI tax id: 296
  • Matching level: species

doi: 10.13145/bacdive141185.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas fragi
  • full scientific name: Pseudomonas fragi (Eichholz 1902) Gruber 1905 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium fragi

@ref: 44106

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas fragi

type strain: no

Morphology

colony morphology

  • @ref: 44106
  • incubation period: 2 days

Culture and growth conditions

culture temp

  • @ref: 44106
  • growth: positive
  • type: growth
  • temperature: 20-30

Physiology and metabolism

oxygen tolerance

  • @ref: 44106
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    44106C12:02.212
    44106C14:00.614
    44106C15:00.415
    44106C16:02916
    44106C10:0 3OH411.423
    44106C12:0 2OH4.813.178
    44106C12:0 3OH3.913.455
    44106C15:0 ISO 3OH0.516.135
    44106C16:1 ω7c27.315.819
    44106C16:1 ω7c DMA0.616.288
    44106C17:0 CYCLO16.516.888
    44106C18:1 ω7c /12t/9t8.317.824
    44106C19:0 CYCLO ω8c1.818.9
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
44106-+---++---++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
44106--++----++----++-++-+

Isolation, sampling and environmental information

isolation

  • @ref: 44106
  • sample type: Human feces,3-yr-old child
  • sampling date: 1968-05-01
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Child
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Infection#Patient

External links

@ref: 44106

culture collection no.: CCUG 45

straininfo link

  • @ref: 96891
  • straininfo: 56550

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44106Curators of the CCUGhttps://www.ccug.se/strain?id=45Culture Collection University of Gothenburg (CCUG) (CCUG 45)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
96891Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID56550.1