Strain identifier

BacDive ID: 141145

Type strain: Yes

Species: Woeseia oceani

Strain Designation: XK5

NCBI tax ID(s): 1548547 (species)

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General

@ref: 44066

BacDive-ID: 141145

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, Gram-negative, rod-shaped, colony-forming

description: Woeseia oceani XK5 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1548547
  • Matching level: species

doi: 10.13145/bacdive141145.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Chromatiales
  • family: Woeseiaceae
  • genus: Woeseia
  • species: Woeseia oceani
  • full scientific name: Woeseia oceani Du et al. 2016

@ref: 44066

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Chromatiales

family: Woeseiaceae

genus: Woeseia

species: Woeseia oceani

strain designation: XK5

type strain: yes

Morphology

cell morphology

  • @ref: 44066
  • gram stain: negative
  • cell length: 0.8-2.5 µm
  • cell width: 0.3-0.5 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 44066
  • colony size: 1 mm
  • colony color: brownish
  • colony shape: circular
  • incubation period: 2 days

Culture and growth conditions

culture medium

  • @ref: 44066
  • name: 2216E
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
44066positivegrowth8-42
44066positiveoptimum28-35mesophilic

culture pH

@refabilitytypepHPH range
44066positivegrowth6.0-9.0alkaliphile
44066positiveoptimum7.0-8.0

Physiology and metabolism

oxygen tolerance

  • @ref: 44066
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
44066NaClpositivegrowth0.5-8 %(w/v)
44066NaClpositiveoptimum1-3 %(w/v)
44066NaClnogrowth0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4406615688acetoin-assimilation
4406616947citrate-assimilation
4406616136hydrogen sulfide-assimilation
4406635581indole-assimilation
4406658187alginate-hydrolysis
4406662968cellulose-hydrolysis
4406628017starch-hydrolysis
4406653426tween 80-hydrolysis
4406613705acetoacetate+assimilation
4406629990D-aspartate+assimilation
4406678697D-fructose 6-phosphate+assimilation
4406615748D-glucuronate+assimilation
4406632323glucuronamide+assimilation
4406617754glycerol+assimilation
4406618287L-fucose+assimilation
4406662345L-rhamnose+assimilation
4406616988D-ribose+builds acid from
4406616443D-tagatose+builds acid from
44066potassium 5-dehydro-D-gluconate+builds acid from
440665291gelatin+hydrolysis
4406628847D-fucose+oxidation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitiveis resistant
4406628077rifampicinyesyes
4406617076streptomycinyesyes
4406648923erythromycinyesyes
44066204928cefotaximeyesyes
4406617698chloramphenicolyesyes
4406617334penicillinyesyes
440666472lincomycinyesyes
440663745clindamycinyesyes
4406645924trimethoprimyesyes

metabolite production

@refChebi-IDmetaboliteproduction
4406615688acetoinno
4406616136hydrogen sulfideno
4406635581indoleno

enzymes

@refvalueactivityec
44066catalase+/-1.11.1.6
44066cytochrome oxidase-1.9.3.1
44066alkaline phosphatase+3.1.3.1
44066leucine arylamidase+3.4.11.1
44066valine arylamidase+
44066trypsin+3.4.21.4
44066chymotrypsin+3.4.4.5
44066esterase (C 4)+
44066esterase Lipase (C 8)+/-
44066lipase (C 14)+/-
44066cystine arylamidase+/-3.4.11.3
44066acid phosphatase+/-3.1.3.2
44066naphthol-AS-BI-phosphohydrolase+/-
44066alpha-galactosidase-3.2.1.22
44066beta-galactosidase-3.2.1.23
44066alpha-glucosidase-3.2.1.20
44066beta-glucosidase-3.2.1.21
44066beta-glucuronidase-3.2.1.31
44066N-acetyl-beta-glucosaminidase-3.2.1.52
44066alpha-mannosidase-3.2.1.24
44066alpha-fucosidase-3.2.1.51
44066arginine dihydrolase-3.5.3.6
44066lysine decarboxylase-4.1.1.18
44066ornithine decarboxylase-4.1.1.17
44066urease-3.5.1.5
44066tryptophan deaminase-4.1.99.1

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    44066C14:01
    44066C16:011.6
    44066C16:1ω7c / 16:1ω6c11.9
    44066C18:1ω7c4.5
    44066C10:0 iso1.5
    44066C11:0 iso 3OH2.4
    44066C11:0 iso 3OH1.7
    44066C13:0 iso 3OH2.2
    44066C14:0 iso2.8
    44066C15:0 iso19
    44066C16:0 iso9.4
    44066C17:0 iso4.1
    44066C17:1 iso ω9c19.3
  • type of FA analysis: whole cell analysis
  • incubation medium: 2216 E agar
  • incubation temperature: 33
  • library/peak naming table: TSBA40
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 44066
  • sample type: marine sediment
  • geographic location: Xiaoshi Island, Weihai
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 37.5267
  • longitude: 122.016
  • enrichment culture: 2216E agar (HopeBio)
  • enrichment culture duration: 5 days
  • enrichment culture temperature: 28

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_1122.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_192;96_656;97_759;98_878;99_1122&stattab=map
  • Last taxonomy: Woeseia oceani subclade
  • 16S sequence: KM034745
  • Sequence Identity:
  • Total samples: 2130
  • soil counts: 183
  • aquatic counts: 1902
  • animal counts: 30
  • plant counts: 15

Sequence information

16S sequences

  • @ref: 44066
  • description: 16S rRNA gene sequence
  • accession: KM034745
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Woeseia oceani XK5GCA_001677435completencbi1548547
66792Woeseia oceani XK52751185661completeimg1548547

GC content

  • @ref: 44066
  • GC-content: 59.3
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno83.469yes
gram-positiveno98.462yes
anaerobicno99.035yes
aerobicyes78.004yes
halophileno68.981no
spore-formingno97.173no
thermophileno97.972no
glucose-utilyes81.388no
motileyes69.013yes
glucose-fermentno86.294no

External links

@ref: 44066

culture collection no.: ATCC BAA 2615, CICC 10905

literature

  • topic: Phylogeny
  • Pubmed-ID: 26474827
  • title: Woeseia oceani gen. nov., sp. nov., a chemoheterotrophic member of the order Chromatiales, and proposal of Woeseiaceae fam. nov.
  • authors: Du ZJ, Wang ZJ, Zhao JX, Chen GJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000683
  • year: 2015
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Islands, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44066Zong-Jun Du, Zong-Jie Wang, Jin-Xin Zhao and Guan-Jun ChenWoeseia oceani gen. nov., sp. nov., a chemoheterotrophic member of the order Chromatiales, and proposal of Woeseiaceae fam. nov.10.1099/ijsem.0.000683IJSEM 66: 107-112 201626474827
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/