Strain identifier

BacDive ID: 141128

Type strain: Yes

Species: Catenulispora fulva

Strain Designation: SA-246

Strain history: <- NBRC; NBRC 110074 <- K.-S. Whang, Mokwon Univ., College of Science & Technol., Daejeon, Korea; SA-246

NCBI tax ID(s): 627675 (species)

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General

@ref: 66445

BacDive-ID: 141128

DSM-Number: 108657

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive

description: Catenulispora fulva SA-246 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from forest soil.

NCBI tax id

  • NCBI tax id: 627675
  • Matching level: species

strain history

  • @ref: 66445
  • history: <- NBRC; NBRC 110074 <- K.-S. Whang, Mokwon Univ., College of Science & Technol., Daejeon, Korea; SA-246

doi: 10.13145/bacdive141128.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Catenulisporales
  • family: Catenulisporaceae
  • genus: Catenulispora
  • species: Catenulispora fulva
  • full scientific name: Catenulispora fulva Lee and Whang 2016

@ref: 66445

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Catenulisporales

family: Catenulisporaceae

genus: Catenulispora

species: Catenulispora fulva

full scientific name: Catenulispora fulva Lee and Whang 2016

strain designation: SA-246

type strain: yes

Morphology

cell morphology

  • @ref: 44039
  • gram stain: positive

pigmentation

  • @ref: 44039
  • production: no
  • name: Melanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
44039oatmeal agar (ISP 3)yes
44039yeast extract-malt extract agar (ISP 2)yes
66445R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
66445ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperature
44039positivegrowth15-42
44039positiveoptimum28
66445positivegrowth28

culture pH

@refabilitytypepHPH range
44039positivegrowth4.0-7.0acidophile
44039positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 44039
  • oxygen tolerance: aerobe

spore formation

  • @ref: 44039
  • spore description: rectiflexible or straight spore chains with rod-shaped and smooth-surfaced spores
  • type of spore: spore
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
44039NaClpositivegrowth0-2 %(w/v)
44039NaClnogrowth3 %(w/v)

observation

  • @ref: 44039
  • observation: well-developed and extensively branched substrate mycelium

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4403917057cellobiose-carbon source
4403962968cellulose-carbon source
4403915824D-fructose-carbon source
4403912936D-galactose-carbon source
4403965327D-xylose-carbon source
4403915443inulin-carbon source
4403930849L-arabinose-carbon source
4403928053melibiose-carbon source
4403917268myo-inositol-carbon source
4403916634raffinose-carbon source
4403917634D-glucose+carbon source
4403916899D-mannitol+carbon source
4403962345L-rhamnose+carbon source
4403917992sucrose+carbon source
44039casein+hydrolysis
440395291gelatin+hydrolysis
4403928017starch+hydrolysis

enzymes

  • @ref: 44039
  • value: catalase
  • activity: -
  • ec: 1.11.1.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    44039C15:0 anteiso10.4
    44039C17:0 anteiso20.1
    44039C15:03.5
    44039C16:04.8
    44039C17:03.2
    44039C18:01.1
    44039C15:0 iso6.4
    44039C16:0 iso34.3
    44039C16:1 iso H1.4
    44039C17:0 iso13.3
  • type of FA analysis: whole cell analysis
  • incubation medium: TSA (Difco)
  • incubation temperature: 28
  • incubation time: 10
  • library/peak naming table: TSBA40
  • system: MIS MIDI
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 44039
  • sample type: forest soil
  • geographic location: Chungnam
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia
  • enrichment culture: 100-fold dilution of nutrient broth (NB)
  • enrichment culture duration: 20 days
  • enrichment culture temperature: 30

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_141367.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_3004;97_3691;98_21040;99_141367&stattab=map
  • Last taxonomy: Catenulispora fulva
  • 16S sequence: FJ796419
  • Sequence Identity:
  • Total samples: 1752
  • soil counts: 1548
  • aquatic counts: 67
  • animal counts: 82
  • plant counts: 55

Safety information

risk assessment

  • @ref: 66445
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 44039
  • description: Catenulispora fulva 16S ribosomal RNA gene, partial sequence
  • accession: FJ796419
  • database: nuccore

GC content

  • @ref: 44039
  • GC-content: 71
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 66445

culture collection no.: KACC 17878, NBRC 110074, DSM 108657

straininfo link

  • @ref: 96866
  • straininfo: 404166

literature

  • topic: Phylogeny
  • Pubmed-ID: 26507964
  • title: Catenulispora fulva sp. nov., isolated from forest soil.
  • authors: Lee HJ, Whang KS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000711
  • year: 2015
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Forests, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44039Hyo-Jin Lee and Kyung-Sook WhangCatenulispora fulva sp. nov., isolated from forest soil10.1099/ijsem.0.000711IJSEM 66: 271-275 201626507964
66445Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108657Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108657)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96866Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404166.1