Strain identifier

BacDive ID: 141025

Type strain: Yes

Species: Caballeronia ptereochthonis

Strain Designation: R-52634

Strain history: CIP <- 2016, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-52634

NCBI tax ID(s): 1777144 (species)

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General

@ref: 43568

BacDive-ID: 141025

keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Caballeronia ptereochthonis R-52634 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Soil.

NCBI tax id

  • NCBI tax id: 1777144
  • Matching level: species

strain history

  • @ref: 122040
  • history: CIP <- 2016, P. Vandamme, Ghent Univ., Ghent, Belgium: strain R-52634

doi: 10.13145/bacdive141025.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Caballeronia
  • species: Caballeronia ptereochthonis
  • full scientific name: Caballeronia ptereochthonis (Peeters et al. 2016) Dobritsa et al. 2017

  • synonyms

    • @ref: 20215
    • synonym: Burkholderia ptereochthonis

@ref: 43568

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Caballeronia

species: Caballeronia ptereochthonis

strain designation: R-52634

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.994
122040negativerod-shapedyes

Culture and growth conditions

culture medium

  • @ref: 122040
  • name: CIP Medium 45
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

  • @ref: 63472
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63472
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.992

Isolation, sampling and environmental information

isolation

@refsample typesampling datecountryorigin.countrycontinentisolation date
63472Soil2014BelgiumBELEurope
122040Environment, SoilBelgiumBELEurope2014-01-02

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 122040
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Caballeronia ptereochthonis LMG 29326GCA_001545075contigncbi1777144
66792Burkholderia sp. strain LMG 2932636773.32wgspatric36773
66792Caballeronia ptereochthonis LMG 293262724679459draftimg1777144

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.643no
anaerobicno98.39yes
halophileno93.686no
spore-formingno94.056no
glucose-utilyes89.547no
aerobicyes89.446yes
motileyes89.92no
flagellatedno78.958no
thermophileno99.152yes
glucose-fermentno89.794no

External links

@ref: 43568

culture collection no.: LMG 29326, CCUG 68403, CIP 110997

literature

Pubmed-IDtitleauthorsjournalDOIyeartopicmeshtopic2
27375597Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS, Vandamme PFront Microbiol10.3389/fmicb.2016.008772016
29863457Burkholderia insecticola sp. nov., a gut symbiotic bacterium of the bean bug Riptortus pedestris.Takeshita K, Tamaki H, Ohbayashi T, Meng XY, Sone T, Mitani Y, Peeters C, Kikuchi Y, Vandamme PInt J Syst Evol Microbiol10.1099/ijsem.0.0028482018PhylogenyAnimals, Bacterial Typing Techniques, Base Composition, Burkholderia/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Digestive System/*microbiology, Fatty Acids/chemistry, Heteroptera/*microbiology, Japan, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Symbiosis, Ubiquinone/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43568Anatoly P. Dobritsa, Elena V. Linardopoulou, Mansour SamadpourTransfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov.10.1099/ijsem.0.002202IJSEM 67: 3846-3853 201728879843
63472Curators of the CCUGhttps://www.ccug.se/strain?id=68403Culture Collection University of Gothenburg (CCUG) (CCUG 68403)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
122040Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110997Collection of Institut Pasteur (CIP 110997)