Strain identifier

BacDive ID: 140832

Type strain: Yes

Species: Fodinibius halophilus

Strain Designation: 2W32

Strain history: <- Zong-Jun Du, Shandong Univ.

NCBI tax ID(s): 1736908 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 8.1 (current version)

General

@ref: 43632

BacDive-ID: 140832

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, moderately halophilic, Gram-negative, rod-shaped, colony-forming

description: Fodinibius halophilus 2W32 is a facultative anaerobe, moderately halophilic, Gram-negative bacterium that forms circular colonies and was isolated from Marine solar saltern.

NCBI tax id

  • NCBI tax id: 1736908
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Zong-Jun Du, Shandong Univ.

doi: 10.13145/bacdive140832.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/balneolota
  • domain: Bacteria
  • phylum: Balneolota
  • class: Balneolia
  • order: Balneolales
  • family: Balneolaceae
  • genus: Fodinibius
  • species: Fodinibius halophilus
  • full scientific name: Fodinibius halophilus (Xia et al. 2016) Galisteo et al. 2023

  • synonyms

    • @ref: 20215
    • synonym: Aliifodinibius halophilus

@ref: 43632

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Balneolales

family: Balneolaceae

genus: Aliifodinibius

species: Aliifodinibius halophilus

strain designation: 2W32

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
43632negative4-5.5 µm0.5-0.7 µmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

  • @ref: 43632
  • colony size: 1 mm
  • colony color: Reddish
  • colony shape: circular
  • incubation period: 2 days
  • medium used: Modified MA

Culture and growth conditions

culture medium

  • @ref: 43632
  • name: Modified MA
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43632positivegrowth20-45
43632positiveoptimum33-37mesophilic
67771positivegrowth33-37mesophilic

culture pH

@refabilitytypepHPH range
43632positivegrowth7-8.5alkaliphile
43632positiveoptimum7.5-8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43632facultative anaerobe
67771facultative anaerobe

halophily

@refhalophily levelsaltgrowthtested relationconcentration
43632moderately halophilicNaClpositivegrowth2-18 %(w/v)
43632moderately halophilicNaClpositiveoptimum6-10 %(w/v)

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4363258187alginate-hydrolysis
4363262968cellulose-hydrolysis
4363218059lipid-hydrolysis
4363228017starch-hydrolysis
4363217632nitrate-reduction
4363216947citrate+assimilation
4363216988D-ribose+builds acid from
4363216443D-tagatose+builds acid from
43632potassium 5-dehydro-D-gluconate+builds acid from
4363232323glucuronamide+oxidation
4363217754glycerol+oxidation
4363217992sucrose+oxidation
4363215824D-fructose+/-builds acid from
4363262318D-lyxose+/-builds acid from
4363217266L-sorbose+/-builds acid from
43632309162-oxoglutarate+/-oxidation
4363213705acetoacetate+/-oxidation
4363278697D-fructose 6-phosphate+/-oxidation
4363232528turanose+/-oxidation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
4363228971ampicillinyesyes10 µg (disc)
4363218208penicillin gyesyes10 µg (disc)
4363229007ceftriaxoneyesyes30 µg (disc)
4363248923erythromycinyesyes15 µg (disc)
4363228077rifampicinyesyes5 µg (disc)
4363231168acetylspiramycinyesyes30 µg (disc)
436326472lincomycinyesyes2 µg (disc)
436327731ofloxacinyesyes5 µg (disc)
436323745clindamycinyesyes2 µg (disc)
43632204928cefotaximeyesyes30 µg (disc)
4363217698chloramphenicolyesyes30 µg (disc)
4363228864tobramycinyesyes10 µg
436327507neomycinyesyes30 µg
4363227902tetracyclineyesyes30 µg
43632100147nalidixic acidyesyes30 µg
4363217833gentamicinyesyes30 µg
436326104kanamycinyesyes30 µg

metabolite production

@refChebi-IDmetaboliteproduction
4363215688acetoinno
4363216136hydrogen sulfideno
4363235581indoleno

metabolite tests

  • @ref: 43632
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
43632catalase+1.11.1.6
43632cytochrome oxidase-1.9.3.1
43632gelatinase+
43632beta-galactosidase+3.2.1.23

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43632C15:0 anteiso24.96
    43632C17:0 anteiso5.6
    43632C17:1 anteiso0.83
    43632C14:00.68
    43632C16:04.51
    43632C16:0N-alcohol0.81
    43632C16:1ω11c2.04
    43632C16:1ω7c / C16:1ω6c1.19
    43632C16:1ω7calcohol1.96
    43632C17:00.83
    43632C18:00.66
    43632C18:1ω9c0.36
    43632C14:0 iso6.65
    43632C15:0 iso26.51
    43632C16:0 iso7.13
    43632C17:0 iso4.77
    43632C17:1 iso I / C17:1 anteiso B1.43
    43632C17:1 iso ω10c1.61
  • type of FA analysis: whole cell analysis
  • incubation medium: MA
  • agar/liquid: agar
  • incubation temperature: 37
  • incubation time: 4
  • incubation_oxygen: aerobic
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA40
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
43632Marine solar salternWeihai coast, Shandong ProvinceChinaCHNAsia36.996122.01
67771From marine solar saltern on the coast of WeihaiShandong ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Condition#Saline
#Engineered#Industrial#Industrial production
#Environmental#Terrestrial#Coast

taxonmaps

  • @ref: 69479
  • File name: preview.99_30737.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2060;96_8921;97_12078;98_14852;99_30737&stattab=map
  • Last taxonomy: Aliifodinibius
  • 16S sequence: KR559733
  • Sequence Identity:
  • Total samples: 45
  • soil counts: 10
  • aquatic counts: 33
  • animal counts: 2

Sequence information

16S sequences

  • @ref: 43632
  • description: 16S rRNA gene sequence
  • accession: KR559733
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Fodinibius halophilus 2W32GCA_011059105contigncbi1736908
66792Aliifodinibius halophilus 2W322890260962draftimg1736908

GC content

@refGC-contentmethod
4363247.5high performance liquid chromatography (HPLC)
6777147.5

External links

@ref: 43632

culture collection no.: KCTC 42497, CICC 23869

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26961808Aliifodinibius halophilus sp. nov., a moderately halophilic member of the genus Aliifodinibius, and proposal of Balneolaceae fam. nov.Xia J, Ling SK, Wang XQ, Chen GJ, Du ZJInt J Syst Evol Microbiol10.1099/ijsem.0.0010122016Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gram-Positive Rods/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *Water MicrobiologyEnzymology
Phylogeny32123983Aliifodinibius salipaludis sp. nov., Isolated from Saline-Alkaline Soil.Zhao X, Miao S, Sun Y, Gong Q, Zhao J, Wang J, Zhang GCurr Microbiol10.1007/s00284-019-01863-w2020*Bacteria/chemistry/classification/genetics, China, Genome, Bacterial/genetics, Hydrogen-Ion Concentration, Soil MicrobiologyGenetics

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43632Jun Xia, Si-Kai Ling, Xiao-Qun Wang, Guan-Jun Chen, Zong-Jun DuAliifodinibius halophilus sp. nov., a moderately halophilic member of the genus Aliifodinibius, and proposal of Balneolaceae fam. nov.10.1099/ijsem.0.001012IJSEM 66: 2225-2233 201626961808
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/