Strain identifier

BacDive ID: 140827

Type strain: Yes

Species: Pseudoalteromonas fenneropenaei

Strain Designation: rzy34

NCBI tax ID(s): 1737459 (species)

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General

@ref: 43621

BacDive-ID: 140827

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Pseudoalteromonas fenneropenaei rzy34 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from Sediment of a pond containing farmed Fenneropenaeus chinensis.

NCBI tax id

  • NCBI tax id: 1737459
  • Matching level: species

doi: 10.13145/bacdive140827.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Pseudoalteromonadaceae
  • genus: Pseudoalteromonas
  • species: Pseudoalteromonas fenneropenaei
  • full scientific name: Pseudoalteromonas fenneropenaei Ying et al. 2016

@ref: 43621

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas fenneropenaei

strain designation: rzy34

type strain: yes

Morphology

cell morphology

  • @ref: 43621
  • gram stain: negative
  • cell length: 1.8-3 µm
  • cell width: 0.8-1.3 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: polar

colony morphology

  • @ref: 43621
  • colony color: non-pigmented
  • colony shape: circular
  • incubation period: 2 days
  • medium used: 2216E agar

pigmentation

  • @ref: 43621
  • production: no

Culture and growth conditions

culture medium

  • @ref: 43621
  • name: 2216E agar
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43621positivegrowth20-40
43621positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
43621positivegrowth6-10alkaliphile
43621positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 43621
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43621
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43621NaClpositivegrowth1-6 %
43621NaClpositiveoptimum1-2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4362117128adipate-assimilation
4362127689decanoate-assimilation
4362116899D-mannitol-assimilation
4362130849L-arabinose-assimilation
4362125115malate-assimilation
4362118401phenylacetate-assimilation
4362132032potassium gluconate-assimilation
4362153258sodium citrate-assimilation
4362127082trehalose-carbon source
4362127613amygdalin-fermentation
4362122599arabinose-fermentation
4362117634D-glucose-fermentation
4362117268myo-inositol-fermentation
4362129864mannitol-fermentation
4362128053melibiose-fermentation
4362126546rhamnose-fermentation
4362130911sorbitol-fermentation
4362116947citrate+assimilation
4362116024D-mannose+assimilation
4362117306maltose+assimilation
43621506227N-acetylglucosamine+assimilation
4362123652dextrin+carbon source
4362128757fructose+carbon source
4362117716lactose+carbon source
4362117306maltose+carbon source
4362129864mannitol+carbon source
4362130911sorbitol+carbon source
4362117992sucrose+carbon source
43621casein+hydrolysis
436215291gelatin+hydrolysis
4362128017starch+hydrolysis
4362117632nitrate+reduction

metabolite production

@refChebi-IDmetaboliteproduction
4362115688acetoinno
4362135581indoleno
4362116136hydrogen sulfideyes

metabolite tests

  • @ref: 43621
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
43621catalase+1.11.1.6
43621cytochrome oxidase+1.9.3.1
43621alkaline phosphatase+3.1.3.1
43621leucine aminopeptidase+3.4.1.1
43621valine aminopeptidase+
43621trypsin+3.4.21.4
43621acid phosphatase+3.1.3.2
43621naphthol-AS-BI-phosphohydrolase+
43621N-acetyl-beta-glucosaminidase-3.2.1.52
43621esterase (C 4)-
43621esterase Lipase (C 8)-
43621lipase (C 14)-
43621cystine aminopeptidase-3.4.11.3
43621alpha-chymotrypsin-3.4.21.1
43621alpha-galactosidase-3.2.1.22
43621beta-galactosidase-3.2.1.23
43621beta-glucuronidase-3.2.1.31
43621alpha-glucosidase-3.2.1.20
43621beta-glucosidase-3.2.1.21
43621alpha-fucosidase-3.2.1.51
43621alpha-mannosidase-3.2.1.24
43621arginine dihydrolase-3.5.3.6
43621urease-3.5.1.5
43621gelatinase+
43621lysine decarboxylase-4.1.1.18
43621ornithine decarboxylase-4.1.1.17
43621tryptophan deaminase+4.1.99.1
43621leucine arylamidase+3.4.11.1
43621beta-D-fucosidase-3.2.1.38
43621protease-

Isolation, sampling and environmental information

isolation

  • @ref: 43621
  • sample type: Sediment of a pond containing farmed Fenneropenaeus chinensis
  • geographic location: Rizhao
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 35.501
  • longitude: 119.619
  • isolation date: 2013-10

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Pond (small)
#Environmental#Aquatic#Sediment
#Host#Arthropoda#Crustacea

taxonmaps

  • @ref: 69479
  • File name: preview.99_111205.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_57;96_44475;97_56959;98_75465;99_111205&stattab=map
  • Last taxonomy: Pseudoalteromonas fenneropenaei subclade
  • 16S sequence: KR709258
  • Sequence Identity:
  • Total samples: 292
  • soil counts: 12
  • aquatic counts: 238
  • animal counts: 38
  • plant counts: 4

Sequence information

16S sequences

  • @ref: 43621
  • description: 16S rRNA gene sequence
  • accession: KR709258
  • database: nuccore

GC content

  • @ref: 43621
  • GC-content: 45.3

External links

@ref: 43621

culture collection no.: CGMCC 1.15325, KCTC 42730

literature

  • topic: Phylogeny
  • Pubmed-ID: 27149865
  • title: Pseudoalteromonas fenneropenaei sp. nov., a marine bacterium isolated from sediment of a Fenneropenaeus chinensis pond.
  • authors: Ying Y, Tian XX, Wang JJ, Qu LY, Li J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001128
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, Ponds/*microbiology, Pseudoalteromonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43621Yu Ying, Xin-Xin Tian, Jia-Jia Wang, Ling-Yun Qu, Jian LiPseudoalteromonas fenneropenaei sp. nov., a marine bacterium isolated from sediment of a Fenneropenaeus chinensis pond10.1099/ijsem.0.001128IJSEM 66: 2754-2759 201627149865
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/