Strain identifier
BacDive ID: 140801
Type strain: 
Species: Kosakonia oryziphila
Strain Designation: REICA_142
NCBI tax ID(s): 1005667 (species)
version 8.1 (current version)
General
@ref: 43582
BacDive-ID: 140801
keywords: genome sequence, Bacteria, motile
description: Kosakonia oryziphila REICA_142 is a motile bacterium of the family Enterobacteriaceae.
NCBI tax id
- NCBI tax id: 1005667
- Matching level: species
doi: 10.13145/bacdive140801.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Kosakonia
- species: Kosakonia oryziphila
- full scientific name: Kosakonia oryziphila (Hardoim et al. 2015) Li et al. 2016
synonyms
- @ref: 20215
- synonym: Enterobacter oryziphilus
@ref: 43582
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Kosakonia
species: Kosakonia oryziphila
strain designation: REICA_142
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 95.72 | |
| 69480 | 99.908 | negative |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.621 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43582 | 28053 | melibiose | - | carbon source |
| 43582 | 17148 | putrescine | - | carbon source |
| 43582 | 16634 | raffinose | - | carbon source |
| 43582 | 18333 | D-arabitol | + | carbon source |
| 43582 | 18287 | L-fucose | + | carbon source |
| 43582 | 17268 | myo-inositol | + | carbon source |
| 43582 | 32528 | turanose | + | carbon source |
| 43582 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 43582 | arginine dihydrolase | + | 3.5.3.6 |
| 43582 | lysine decarboxylase | - | 4.1.1.18 |
| 43582 | ornithine decarboxylase | - | 4.1.1.17 |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Kosakonia oryziphila REICA_142 | GCA_900094795 | scaffold | ncbi | 1005667 |
| 66792 | Kosakonia oryziphila REICA_142 | 2616644846 | draft | img | 1005667 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 89.205 | no |
| flagellated | no | 50 | no |
| gram-positive | no | 98.092 | no |
| anaerobic | no | 94.95 | no |
| aerobic | no | 63.319 | no |
| halophile | no | 93.89 | no |
| spore-forming | no | 92.279 | no |
| glucose-ferment | yes | 91.703 | no |
| thermophile | no | 99.445 | no |
| glucose-util | yes | 95.441 | no |
External links
@ref: 43582
culture collection no.: LMG 26429, NCCB 100393
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23865888 | The new species Enterobacter oryziphilus sp. nov. and Enterobacter oryzendophyticus sp. nov. are key inhabitants of the endosphere of rice. | Hardoim PR, Nazir R, Sessitsch A, Elhottova D, Korenblum E, van Overbeek LS, van Elsas JD | BMC Microbiol | 10.1186/1471-2180-13-164 | 2013 | Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics/physiology, Enterobacteriaceae/*classification/genetics/*isolation & purification, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Oryza/*microbiology, Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Phylogeny | 27045188 | Reclassification of Enterobacter oryziphilus and Enterobacter oryzendophyticus as Kosakonia oryziphila comb. nov. and Kosakonia oryzendophytica comb. nov. | Li CY, Zhou YL, Ji J, Gu CT | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001054 | 2016 | DNA, Bacterial/genetics, Enterobacter/classification, Enterobacteriaceae/*classification, Genes, Bacterial, Nucleic Acid Hybridization, *Phylogeny, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url | journal | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 43582 | Chun Yan Li, Yuan Liang Zhou, Jing Ji, Chun Tao Gu | Reclassification of Enterobacter oryziphilus and Enterobacter oryzendophyticus as Kosakonia oryziphila comb. nov. and Kosakonia oryzendophytica comb. nov. | 10.1099/ijsem.0.001054 | IJSEM 66: 2780-2783 2016 | 27045188 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |