Strain identifier

BacDive ID: 140770

Type strain: Yes

Species: Yoonia acticola

Strain Designation: OISW-6

Strain history: <- Jung-Hoon YOON, Sungkyunkwan Univ.

NCBI tax ID(s): 1972512 (species)

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General

@ref: 43548

BacDive-ID: 140770

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, pleomorphic-shaped, colony-forming

description: Yoonia acticola OISW-6 is an aerobe, Gram-negative, pleomorphic-shaped bacterium that forms circular colonies and was isolated from Yellow Sea seawater from the coast of Oido.

NCBI tax id

  • NCBI tax id: 1972512
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Jung-Hoon YOON, Sungkyunkwan Univ.

doi: 10.13145/bacdive140770.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Yoonia
  • species: Yoonia acticola
  • full scientific name: Yoonia acticola (Park et al. 2017) Wang et al. 2022

  • synonyms

    • @ref: 20215
    • synonym: Loktanella acticola

@ref: 43548

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Loktanella

species: Loktanella acticola

strain designation: OISW-6

type strain: yes

Morphology

cell morphology

  • @ref: 43548
  • gram stain: negative
  • cell length: 0.4-1.2 µm
  • cell shape: pleomorphic-shaped
  • motility: no

colony morphology

  • @ref: 43548
  • colony size: 0.5-1 mm
  • colony color: greyish yellow
  • colony shape: circular
  • incubation period: 7 days
  • medium used: MA agar

Culture and growth conditions

culture medium

  • @ref: 43548
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43548positivegrowth4-30
43548nogrowth35mesophilic
43548positiveoptimum25mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepH
43548positivegrowth6-8
43548nogrowth5.5
43548positiveoptimum7-8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43548aerobe
67771aerobe

spore formation

  • @ref: 43548
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43548NaClpositivegrowth0-8 %(w/v)
43548NaClpositiveoptimum2-3 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4354817057cellobiose-builds acid from
4354812936D-galactose-builds acid from
4354817634D-glucose-builds acid from
4354816024D-mannose-builds acid from
4354816988D-ribose-builds acid from
4354817924D-sorbitol-builds acid from
4354865327D-xylose-builds acid from
4354830849L-arabinose-builds acid from
4354862345L-rhamnose-builds acid from
4354817716lactose-builds acid from
4354817306maltose-builds acid from
435486731melezitose-builds acid from
4354828053melibiose-builds acid from
4354817268myo-inositol-builds acid from
4354816634raffinose-builds acid from
4354817992sucrose-builds acid from
4354827082trehalose-builds acid from
435482509agar-hydrolysis
43548casein-hydrolysis
435485291gelatin-hydrolysis
4354817895L-tyrosine-hydrolysis
4354828017starch-hydrolysis
4354816199urea-hydrolysis
4354815318xanthine-hydrolysis
4354817632nitrate-reduction
4354815824D-fructose+builds acid from
4354816899D-mannitol+builds acid from
435484853esculin+hydrolysis
4354817368hypoxanthine+hydrolysis
4354853426tween 80+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
4354828971ampicillinyesyes10 µg (disc)
435486104kanamycinyesyes30 µg (disc)
435487507neomycinyesyes30 µg (disc)
4354818208penicillin gyesyes20 Unit (disc)
4354817076streptomycinyesyes50 µg (disc)
4354827902tetracyclineyesyes30 µg (disc)
435488309polymyxin byesyes100 Unit (disc)

enzymes

@refvalueactivityec
43548cytochrome oxidase+1.9.3.1
43548catalase+1.11.1.6
43548alkaline phosphatase+3.1.3.1
43548esterase (C 4)+
43548esterase Lipase (C 8)+
43548leucine arylamidase+3.4.11.1
43548naphthol-AS-BI-phosphohydrolase+
43548lipase (C 14)-
43548valine arylamidase-
43548cystine arylamidase-3.4.11.3
43548trypsin-3.4.21.4
43548alpha-chymotrypsin-3.4.21.1
43548acid phosphatase-3.1.3.2
43548alpha-galactosidase-3.2.1.22
43548beta-galactosidase-3.2.1.23
43548beta-glucuronidase-3.2.1.31
43548alpha-glucosidase-3.2.1.20
43548beta-glucosidase-3.2.1.21
43548N-acetyl-beta-glucosaminidase-3.2.1.52
43548alpha-mannosidase-3.2.1.24
43548alpha-fucosidase-3.2.1.51

fatty acid profile

  • @reffatty acidpercentage
    43548C10:0 3OH1.6
    43548C12:1 3OH3.3
    43548C16:07.2
    43548C16:1ω7c / C16:1ω6c1.6
    43548C18:02
    43548C18:1ω7c72.8
    4354811-methyl C18:1ω7c9.4
    43548C18:1ω9c0.6
    43548unknown 18.846 / C19:1ω6c / cyclo-C19:0.7
  • type of FA analysis: whole cell analysis
  • incubation medium: Marine agar 2216
  • agar/liquid: agar
  • incubation temperature: 25
  • incubation time: 5
  • incubation_oxygen: aerobic
  • software version: Sherlock 6.2B
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • cutoff value:
  • @reffatty acidpercentage
    43548C10:0 3OH1.5
    43548C12:1 3OH2.9
    43548C16:07.4
    43548C16:1ω7c / C16:1ω6c1.7
    43548C18:01.9
    43548C18:1ω7c71
    4354811-methyl C18:1ω7c10.9
    43548C18:1ω9c0.6
    43548unknown 18.846 / C19:1ω6c / cyclo-C19:0.9
  • type of FA analysis: whole cell analysis
  • incubation medium: marine agar 2216
  • agar/liquid: agar
  • incubation temperature: 25
  • incubation time: 7
  • incubation_oxygen: aerobic
  • software version: Sherlock 6.2B
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • cutoff value:
  • @reffatty acidpercentage
    43548C13:0 anteiso1.6
    43548C15:0 anteiso10.5
    43548C17:0 anteiso1
    43548C14:01.5
    43548C16:016.7
    43548C16:1ω7c / C15:0 iso 2OH15.8
    43548C18:01.1
    43548C12:0 iso4.2
    43548C14:0 iso35.8
    43548C14:0 iso 3OH2.3
    43548C16:0 iso9.3
  • type of FA analysis: whole cell analysis
  • incubation medium: marine agar 2216
  • agar/liquid: agar
  • incubation temperature: 25
  • incubation time: 10
  • incubation_oxygen: aerobic
  • software version: Sherlock 6.2B
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
43548Yellow Sea seawater from the coast of OidoOido IslandRepublic of KoreaKORAsia
67771From seawaterOido IslandRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Coast

Sequence information

16S sequences

  • @ref: 43548
  • description: 16S rRNA gene sequence
  • accession: KY817315
  • database: nuccore

GC content

  • @ref: 43548
  • GC-content: 57.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43548

culture collection no.: KCTC 52837, NBRC 112781

literature

  • topic: Phylogeny
  • Pubmed-ID: 28920851
  • title: Loktanella acticola sp. nov., isolated from seawater.
  • authors: Park S, Choi SJ, Won SM, Yoon JH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002274
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phosphatidylcholines/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43548Sooyeon Park, Su Jung Choi, Sung-Min Won, Jung-Hoon YoonLoktanella acticola sp. nov., isolated from seawater10.1099/ijsem.0.002274IJSEM 67: 4175-4180 201728920851
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc