Strain identifier

BacDive ID: 140745

Type strain: Yes

Species: Tsuneonella deserti

Strain Designation: THG-S3

NCBI tax ID(s): 2035528 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 8.1 (current version)

General

@ref: 43522

BacDive-ID: 140745

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Tsuneonella deserti THG-S3 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from desert soil.

NCBI tax id

  • NCBI tax id: 2035528
  • Matching level: species

doi: 10.13145/bacdive140745.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Erythrobacteraceae
  • genus: Tsuneonella
  • species: Tsuneonella deserti
  • full scientific name: Tsuneonella deserti (Yan et al. 2017) Kim et al. 2021

  • synonyms

    • @ref: 20215
    • synonym: Altererythrobacter deserti

@ref: 43522

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Erythrobacteraceae

genus: Altererythrobacter

species: Altererythrobacter deserti

strain designation: THG-S3

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
43522negative1.2-1.4 µm0.4-0.6 µmrod-shapedno
69480negative99.993

colony morphology

  • @ref: 43522
  • colony color: Yellow
  • colony shape: circular
  • medium used: Nutrient agar

Culture and growth conditions

culture medium

  • @ref: 43522
  • name: Nutrient agar (NA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43522positivegrowth15-35
43522positiveoptimum28mesophilic

culture pH

@refabilitytypepHPH range
43522positivegrowth5-10alkaliphile
43522positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 43522
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no99
69480no99.989

halophily

@refsaltgrowthtested relationconcentration
43522NaClpositivegrowth0-4 %
43522NaClpositiveoptimum1 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
435222-oxogluconate-assimilation
435223-hydroxybutyrate-assimilation37054
435225-dehydro-D-gluconate-assimilation58143
43522decanoate-assimilation27689
43522citrate-assimilation16947
43522D-mannose-assimilation16024
43522D-sorbitol-assimilation17924
43522lactate-assimilation24996
43522gluconate-assimilation24265
43522myo-inositol-assimilation17268
43522itaconate-assimilation17240
43522L-fucose-assimilation18287
43522L-histidine-assimilation15971
43522L-proline-assimilation17203
43522L-serine-assimilation17115
43522propionate-assimilation17272
43522sodium acetate-assimilation32954
43522sodium citrate-assimilation53258
43522sodium malonate-assimilation62983
43522suberic acid-assimilation9300
43522valerate-assimilation31011
43522casein-hydrolysis
43522chitin-hydrolysis17029
43522starch-hydrolysis28017
43522tween 20-hydrolysis53424
43522tween 80-hydrolysis53426
43522tyrosine-hydrolysis18186
43522nitrate-reduction17632
435224-hydroxybenzoate+assimilation17879
43522adipate+assimilation17128
43522D-glucose+assimilation17634
43522D-mannitol+assimilation16899
43522D-ribose+assimilation16988
43522malate+assimilation25115
43522glycogen+assimilation28087
43522L-alanine+assimilation16977
43522L-arabinose+assimilation30849
43522L-rhamnose+assimilation62345
43522maltose+assimilation17306
43522melibiose+assimilation28053
43522N-acetylglucosamine+assimilation506227
43522phenylacetate+assimilation18401
43522salicin+assimilation17814
43522sucrose+assimilation17992
43522glucose+builds acid from17234
43522cellulose+hydrolysis62968
43522dna+hydrolysis16991

metabolite production

  • @ref: 43522
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
43522cytochrome oxidase+1.9.3.1
43522arginine dihydrolase+3.5.3.6
43522urease+3.5.1.5
43522protease+
43522alkaline phosphatase+3.1.3.1
43522leucine arylamidase+3.4.11.1
43522valine arylamidase+
43522cystine arylamidase+3.4.11.3
43522alpha-chymotrypsin+3.4.21.1
43522trypsin+3.4.21.4
43522naphthol-AS-BI-phosphohydrolase+
43522alpha-galactosidase+3.2.1.22
43522beta-galactosidase+3.2.1.23
43522beta-glucuronidase+3.2.1.31
43522alpha-glucosidase+3.2.1.20
43522beta-glucosidase+3.2.1.21
43522N-acetyl-beta-glucosaminidase+3.2.1.52
43522alpha-fucosidase+3.2.1.51
43522catalase+1.11.1.6
43522lipase (C 14)-
43522alpha-mannosidase-3.2.1.24

Isolation, sampling and environmental information

isolation

  • @ref: 43522
  • sample type: desert soil
  • geographic location: Daecheong Island
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Desert
#Environmental#Terrestrial#Soil
#Condition#Xerophilic

taxonmaps

  • @ref: 69479
  • File name: preview.99_21384.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_543;97_13101;98_16124;99_21384&stattab=map
  • Last taxonomy: Erythrobacteraceae
  • 16S sequence: KY287245
  • Sequence Identity:
  • Total samples: 1706
  • soil counts: 456
  • aquatic counts: 834
  • animal counts: 152
  • plant counts: 264

Sequence information

16S sequences

  • @ref: 43522
  • description: 16S rRNA gene sequence
  • accession: KY287245
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Tsuneonella deserti CGMCC 1.15959GCA_014644315contigncbi2035528
66792Altererythrobacter deserti strain CGMCC 1.159592035528.3wgspatric2035528

GC content

  • @ref: 43522
  • GC-content: 69
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
motileno89.875yes
gram-positiveno97.995yes
anaerobicno99.352yes
aerobicyes90.298yes
halophileno94.055no
spore-formingno95.574no
glucose-utilyes82.513yes
flagellatedno97.628yes
thermophileno97.128yes
glucose-fermentno91.823no

External links

@ref: 43522

culture collection no.: KACC 19190, CGMCC 1.15959

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43522Zheng-Fei Yan, Pei Lin, Kyung-Hwa Won, Jung-Eun Yang, Chang-Tian Li, MooChang Kook, Tae-Hoo YiAltererythrobacter deserti sp. nov., isolated from desert soil10.1099/ijsem.0.002197IJSEM 67: 3806-3811 201728879848
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1