Strain identifier

BacDive ID: 140713

Type strain: Yes

Species: Lewinella maritima

NCBI tax ID(s): 1383882 (species)

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General

@ref: 43488

BacDive-ID: 140713

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Lewinella maritima KACC 17619 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from seawater of the Yellow Sea.

NCBI tax id

  • NCBI tax id: 1383882
  • Matching level: species

doi: 10.13145/bacdive140713.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Saprospiria
  • order: Saprospirales
  • family: Lewinellaceae
  • genus: Lewinella
  • species: Lewinella maritima
  • full scientific name: Lewinella maritima Kang et al. 2017

  • synonyms

    • @ref: 20215
    • synonym: Neolewinella maritima

@ref: 43488

domain: Bacteria

phylum: Bacteroidetes

class: Saprospiria

order: Saprospirales

family: Lewinellaceae

genus: Lewinella

species: Lewinella maritima

type strain: yes

Morphology

cell morphology

  • @ref: 43488
  • gram stain: negative
  • cell length: 2-3.2 µm
  • cell width: 0.8-1 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 43488
  • colony size: 0.6 mm
  • colony color: Orange
  • colony shape: circular
  • incubation period: 3 days
  • medium used: MA agar

Culture and growth conditions

culture medium

  • @ref: 43488
  • name: MA agar
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43488positivegrowth10-37
43488positiveoptimum30mesophilic

culture pH

@refabilitytypepH
43488positivegrowth7-8
43488positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 43488
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
43488NaClpositivegrowth1-4 %
43488NaClpositiveoptimum2 %
43488NaClnogrowth5 %(w/v)

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
43488casein-hydrolysis
43488cellulose-hydrolysis62968
43488dextrin-hydrolysis23652
43488dna-hydrolysis16991
43488gelatin-hydrolysis5291
43488starch-hydrolysis28017
43488carboxymethylcellulose+hydrolysis85146
43488esculin+hydrolysis4853
43488D-alanine+respiration15570
43488D-mannitol+respiration16899
43488DL-carnitine+respiration17126
434884-hydroxybutyrate+respiration16724
43488glucose 1-phosphate+respiration29042
43488glucuronamide+respiration32323
43488L-alanine+respiration16977
43488L-asparagine+respiration17196
43488L-leucine+respiration15603
43488L-phenylalanine+respiration17295
43488L-proline+respiration17203
43488L-pyroglutamic acid+respiration18183
43488myo-inositol+respiration17268
43488propionate+respiration17272
43488raffinose+respiration16634

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
4348828971ampicillinyesyes10 µg (disc)
4348817698chloramphenicolyesyes30
4348828077rifampicinyesyes30
4348817076streptomycinyesyes10
4348827902tetracyclineyesyes30
4348828001vancomycinyesyes30
4348848923erythromycinyesyes15 µg (disc)
4348817833gentamicinyesyes10
434886104kanamycinyesyes30
4348818208penicillin gyesyes10 Unit (disc)

enzymes

@refvalueactivityec
43488cytochrome oxidase+1.9.3.1
43488catalase+1.11.1.6
43488alkaline phosphatase+3.1.3.1
43488leucine arylamidase+3.4.11.1
43488valine arylamidase+
43488cystine arylamidase+3.4.11.3
43488trypsin+3.4.21.4
43488alpha-glucosidase+3.2.1.20
43488N-acetyl-beta-glucosaminidase+3.2.1.52
43488esterase (C 4)-
43488esterase Lipase (C 8)-
43488lipase (C 14)-
43488alpha-chymotrypsin-3.4.21.1
43488acid phosphatase-3.1.3.2
43488naphthol-AS-BI-phosphohydrolase-
43488alpha-galactosidase-3.2.1.22
43488beta-galactosidase-3.2.1.23
43488beta-glucuronidase-3.2.1.31
43488beta-glucosidase-3.2.1.21
43488alpha-mannosidase-3.2.1.24
43488alpha-fucosidase-3.2.1.51
43488beta-galactosidase+3.2.1.23

Isolation, sampling and environmental information

isolation

  • @ref: 43488
  • sample type: seawater of the Yellow Sea
  • geographic location: Shinan-gun, Jeollanam-do
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia
  • latitude: 35.024
  • longitude: 126.17

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_85043.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_489;96_35462;97_45024;98_58921;99_85043&stattab=map
  • Last taxonomy: Lewinella maritima subclade
  • 16S sequence: KF385496
  • Sequence Identity:
  • Total samples: 192
  • soil counts: 24
  • aquatic counts: 159
  • animal counts: 6
  • plant counts: 3

Sequence information

16S sequences

  • @ref: 43488
  • description: 16S rRNA gene sequence
  • accession: KF385496
  • database: nuccore

Genome sequences

  • @ref: 66792
  • description: Neolewinella maritima CECT 8419, type strain
  • accession: GCA_923081025
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1383882

GC content

  • @ref: 43488
  • GC-content: 58.7
  • method: Thermal denaturation, fluorometry

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
aerobicyes85.252no
flagellatedno96.548yes
gram-positiveno97.248yes
anaerobicno99.304no
halophileno75.978no
spore-formingno96.32no
thermophileno95.67no
glucose-utilyes81.929no
motileno89.883yes
glucose-fermentno89.877no

External links

@ref: 43488

culture collection no.: KACC 17619, CECT 8419, HME 9321

literature

  • topic: Phylogeny
  • Pubmed-ID: 28875904
  • title: Lewinella maritima sp. nov., and Lewinella lacunae sp. nov., novel bacteria from marine environments.
  • authors: Kang H, Kim H, Joung Y, Joh K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002176
  • year: 2017
  • mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43488Heeyoung Kang, Haneul Kim, Yochan Joung, Kiseong JohLewinella maritima sp. nov., and Lewinella lacunae sp. nov., novel bacteria from marine environments10.1099/ijsem.0.002176IJSEM 67: 3603-3609 201728875904
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/