Strain identifier

BacDive ID: 140685

Type strain: Yes

Species: Aneurinibacillus sediminis

Strain Designation: 1-10M-8-7-50

Strain history: S.-S. Lee; KEMB, Kyonggi Univ., South Korea; 1-10M-8-7-50.

NCBI tax ID(s): 1776164 (species)

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General

@ref: 43452

BacDive-ID: 140685

keywords: 16S sequence, Bacteria, obligate aerobe, spore-forming, Gram-positive, motile, rod-shaped, colony-forming

description: Aneurinibacillus sediminis 1-10M-8-7-50 is an obligate aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from lagoon sediments.

NCBI tax id

  • NCBI tax id: 1776164
  • Matching level: species

strain history

  • @ref: 67770
  • history: S.-S. Lee; KEMB, Kyonggi Univ., South Korea; 1-10M-8-7-50.

doi: 10.13145/bacdive140685.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Aneurinibacillus
  • species: Aneurinibacillus sediminis
  • full scientific name: Aneurinibacillus sediminis Subhash et al. 2017

@ref: 43452

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Paenibacillaceae

genus: Aneurinibacillus

species: Aneurinibacillus sediminis

strain designation: 1-10M-8-7-50

type strain: yes

Morphology

cell morphology

  • @ref: 43452
  • gram stain: positive
  • cell length: 1.9-2.2 µm
  • cell width: 0.7-0.9 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: peritrichous

colony morphology

  • @ref: 43452
  • colony size: 3-5 mm
  • colony color: Ivory
  • colony shape: circular
  • incubation period: 5 days
  • medium used: R2A agar

Culture and growth conditions

culture medium

  • @ref: 43452
  • name: Reasoner's 2A agar (R2A)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43452positivegrowth25-60
43452positiveoptimum40-42thermophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
43452positivegrowth6-8.8alkaliphile
43452positiveoptimum7-7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 43452
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 43452
  • spore description: ellipsoidal spores are formed in swollen sporangia after 5 days of incubation
  • type of spore: spore
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
43452NaClpositivegrowth0-2 %(w/v)
43452NaClpositiveoptimum0-0.8 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4345217057cellobiose-assimilation
4345217268myo-inositol-assimilation
4345216977L-alanine-assimilation
4345218287L-fucose-assimilation
4345215971L-histidine-assimilation
4345262345L-rhamnose-assimilation
434526731melezitose-assimilation
4345228053melibiose-assimilation
4345216634raffinose-assimilation
4345233942ribose-assimilation
4345230911sorbitol-assimilation
4345227082trehalose-assimilation
4345218222xylose-assimilation
4345217057cellobiose-builds acid from
4345218287L-fucose-builds acid from
4345262345L-rhamnose-builds acid from
434526731melezitose-builds acid from
4345228053melibiose-builds acid from
4345216634raffinose-builds acid from
4345227082trehalose-builds acid from
4345227897tryptophan-energy source
4345217234glucose-fermentation
434525291gelatin-hydrolysis
4345253424tween 20-hydrolysis
4345253426tween 80-hydrolysis
4345216199urea-hydrolysis
4345217632nitrate-reduction
4345215824D-fructose+assimilation
4345212936D-galactose+assimilation
4345217634D-glucose+assimilation
4345216899D-mannitol+assimilation
4345230849L-arabinose+assimilation
4345229991L-aspartate+assimilation
4345229985L-glutamate+assimilation
4345217203L-proline+assimilation
4345217115L-serine+assimilation
4345217716lactose+assimilation
4345217992sucrose+assimilation
4345215824D-fructose+builds acid from
4345217634D-glucose+builds acid from
4345216024D-mannose+builds acid from
4345217306maltose+builds acid from
43452casein+hydrolysis
4345228017starch+hydrolysis
4345218186tyrosine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
4345215688acetoinno
4345216136hydrogen sulfideno
4345235581indoleno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-testindole test
4345217234glucose-
4345215688acetoin-
4345235581indole-

enzymes

@refvalueactivityec
43452catalase+1.11.1.6
43452cytochrome oxidase-1.9.3.1
43452arginine decarboxylase-4.1.1.19
43452lysine decarboxylase-4.1.1.18
43452alkaline phosphatase+3.1.3.1
43452esterase+
43452cystine arylamidase+3.4.11.3
43452acid phosphatase+3.1.3.2
43452naphthol-AS-BI-phosphohydrolase+
43452beta-glucuronidase+3.2.1.31
43452alpha-glucosidase+3.2.1.20
43452beta-glucosidase+3.2.1.21
43452esterase Lipase (C 8)-
43452lipase (C 14)-
43452leucine arylamidase-3.4.11.1
43452valine arylamidase-
43452trypsin-3.4.21.4
43452alpha-chymotrypsin-3.4.21.1
43452alpha-galactosidase-3.2.1.22
434526-phospho-beta-galactosidase-3.2.1.85
43452alpha-mannosidase-3.2.1.24
43452alpha-fucosidase-3.2.1.51
43452N-acetyl-beta-glucosaminidase-3.2.1.52
43452tryptophan deaminase-4.1.99.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
43452lagoon sedimentsNorth CarolinaUSAUSANorth America35.618-77.335
67770Lagoon sedimentsUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Aquatic
#Environmental#Aquatic#Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_145360.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_162;96_542;97_625;98_3650;99_145360&stattab=map
  • Last taxonomy: Aneurinibacillus sediminis
  • 16S sequence: KU324479
  • Sequence Identity:
  • Total samples: 477
  • soil counts: 221
  • aquatic counts: 70
  • animal counts: 137
  • plant counts: 49

Sequence information

16S sequences

  • @ref: 43452
  • description: 16S rRNA gene sequence
  • accession: KU324479
  • database: nuccore

GC content

  • @ref: 43452
  • GC-content: 41.9
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43452

culture collection no.: KEMB 563-460, JCM 31819

literature

  • topic: Phylogeny
  • Pubmed-ID: 28771121
  • title: Aneurinibacillus sediminis sp. nov., isolated from lagoon sediments.
  • authors: Subhash Y, Kim HJ, Lee SS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001963
  • year: 2017
  • mesh: Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, North Carolina, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water Microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43452Y. Subhash, Hye-ji Kim, Sang-Seob LeeAneurinibacillus sediminis sp. nov., isolated from lagoon sediments10.1099/ijsem.0.001963IJSEM 67: 2544-2548 201728771121
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/