Strain identifier
BacDive ID: 140659
Type strain: 
Species: Fibrobacter succinogenes
Strain Designation: S85
NCBI tax ID(s): 833 (species)
version 8.1 (current version)
General
@ref: 43382
BacDive-ID: 140659
keywords: genome sequence, Bacteria
description: Fibrobacter succinogenes S85 is a bacterium of the family Fibrobacteraceae.
NCBI tax id
- NCBI tax id: 833
- Matching level: species
doi: 10.13145/bacdive140659.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/fibrobacterota
- domain: Bacteria
- phylum: Fibrobacterota
- class: Fibrobacteria
- order: Fibrobacterales
- family: Fibrobacteraceae
- genus: Fibrobacter
- species: Fibrobacter succinogenes
- full scientific name: Fibrobacter succinogenes (Hungate 1950) Montgomery et al. 1988
synonyms
- @ref: 20215
- synonym: Bacteroides succinogenes
@ref: 43382
domain: Bacteria
phylum: Fibrobacteres
class: Fibrobacteria
order: Fibrobacterales
family: Fibrobacteraceae
genus: Fibrobacter
species: Fibrobacter succinogenes
strain designation: S85
type strain: yes
Physiology and metabolism
observation
- @ref: 43382
- observation: Cellulase activity under high tannin concentration
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43382 | 62968 | cellulose | + | fermentation |
| 43382 | 62968 | cellulose | + | hydrolysis |
enzymes
- @ref: 43382
- value: cellulase
- activity: +
- ec: 3.2.1.4
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Fibrobacter succinogenes subsp. succinogenes S85 | GCA_000146505 | complete | ncbi | 59374 |
| 66792 | Fibrobacter succinogenes subsp. succinogenes S85 | GCA_000024665 | complete | ncbi | 59374 |
| 66792 | Fibrobacter succinogenes subsp. succinogenes S85 | 59374.5 | complete | patric | 59374 |
| 66792 | Fibrobacter succinogenes S85 | 650377942 | complete | img | 59374 |
| 66792 | Fibrobacter succinogenes S85 | 646311927 | complete | img | 59374 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 90.191 | no |
| flagellated | no | 94.407 | no |
| gram-positive | no | 97.577 | no |
| anaerobic | yes | 98.251 | no |
| aerobic | no | 97.857 | no |
| halophile | no | 91.807 | no |
| spore-forming | no | 92.269 | no |
| thermophile | no | 98.975 | no |
| glucose-util | yes | 68.342 | no |
| glucose-ferment | no | 61.101 | no |
External links
@ref: 43382
culture collection no.: ATCC 19169
straininfo link
- @ref: 96770
- straininfo: 36881
Reference
| @id | authors | title | doi/url | journal | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 43382 | Hee Dong Bae, Tim A. MacAllister, Jay Yanke, K-J. Cheng and A. D. Muir | Effects of Condensed Tannins on Endoglucanase Activity and Filter Paper Digestion by Fibrobacter succinogenes S85 | 10.1128/aem.59.7.2132-2138.1993 | 59(7): 2132-2138 1993 | 16348990 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 96770 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID36881.1 |