Strain identifier

BacDive ID: 140610

Type strain: Yes

Species: Rodentibacter myodis

Strain Designation: Ac151

Strain history: <- H. Christensen, University of Copenhagen, Frederiksberg C, Denmark; Ac151 <- M. Bisgaard <- Ron Boot, Laboratory for Infectious Disease and Screening, Bilthoven, the Netherlands; Ac151

NCBI tax ID(s): 1907939 (species)

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General

@ref: 43243

BacDive-ID: 140610

DSM-Number: 103994

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, colony-forming, animal pathogen

description: Rodentibacter myodis Ac151 is a microaerophile, mesophilic, Gram-negative animal pathogen that forms circular colonies and was isolated from samples from Myodes glareolus.

NCBI tax id

  • NCBI tax id: 1907939
  • Matching level: species

strain history

  • @ref: 69000
  • history: <- H. Christensen, University of Copenhagen, Frederiksberg C, Denmark; Ac151 <- M. Bisgaard <- Ron Boot, Laboratory for Infectious Disease and Screening, Bilthoven, the Netherlands; Ac151

doi: 10.13145/bacdive140610.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Rodentibacter
  • species: Rodentibacter myodis
  • full scientific name: Rodentibacter myodis Adhikary et al. 2017

@ref: 43243

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Rodentibacter

species: Rodentibacter myodis

full scientific name: Rodentibacter myodis Adhikary et al. 2017

strain designation: Ac151

type strain: yes

Morphology

cell morphology

  • @ref: 43243
  • gram stain: negative
  • motility: no

colony morphology

  • @ref: 43243
  • type of hemolysis: gamma
  • colony size: 1-2 mm
  • colony shape: circular
  • incubation period: 1 day
  • medium used: Bovine blood agar

Culture and growth conditions

culture medium

@refnamegrowthlink
69000COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
43243Bovine blood agaryes
43243MacConkey agarno

culture temp

@refgrowthtypetemperaturerange
63641positivegrowth37mesophilic
69000positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63641
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4324317234glucose-fermentation
4324316537galactarate+builds acid from
4324315792malonate+builds base from
4324315226tetrathionate-reduction
4324353424tween 20-hydrolysis
4324348095(-)-D-fructose+builds acid from
4324312936D-galactose+builds acid from
4324317306maltose-builds acid from
4324317634(+)-D-glucose+builds acid from
4324348095(-)-D-fructose-builds gas from
4324312936D-galactose-builds gas from
4324317306maltose-builds gas from
4324317634(+)-D-glucose-builds gas from
4324317113erythritol-builds acid from
4324315963ribitol-builds acid from
4324317151xylitol-builds acid from
4324318333(+)-D-arabitol-builds acid from
4324365328(-)-L-xylose-builds acid from
4324316813galactitol-builds acid from
4324317924D-sorbitol+builds acid from
4324328847(+)-D-fucose-builds acid from
4324362345L-rhamnose-builds acid from
4324317266(-)-L-sorbose-builds acid from
4324317057cellobiose-builds acid from
432436731melezitose-builds acid from
43243(+)-D-glycogen-builds acid from
4324315443inulin-builds acid from
432434853esculin-builds acid from
4324327613amygdalin-builds acid from
4324318305arbutin-builds acid from
4324328066gentiobiose-builds acid from
4324317814salicin-builds acid from
4324332528turanose-builds acid from
4324353426tween 80-hydrolysis
4324317108D-arabinose+builds acid from
4324330849L-arabinose+builds acid from
4324316988(-)-D-ribose+builds acid from
4324365327D-xylose+builds acid from
4324317268myo-inositol+builds acid from
4324316899D-mannitol+builds acid from
4324318287L-fucose+builds acid from
4324316024D-mannose+builds acid from
4324317716lactose+builds acid from
4324317992sucrose+builds acid from
4324327082trehalose-builds acid from
4324323652dextrin-builds acid from
4324317754glycerol+builds acid from
4324328053melibiose+builds acid from
4324316634raffinose+builds acid from

metabolite production

  • @ref: 43243
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-test
4324317234glucose-
4324315688acetoin-

enzymes

@refvalueactivityec
43243catalase+1.11.1.6
43243cytochrome oxidase+1.9.3.1
43243urease+3.5.1.5
43243alkaline phosphatase+3.1.3.1
43243arginine dihydrolase-3.5.3.6
43243phenylalanine deaminase-4.3.1.5
43243gelatinase-
43243beta-glucosidase-3.2.1.21
43243alpha-fucosidase-3.2.1.51
43243beta-xylosidase-
43243alpha-mannosidase-3.2.1.24
43243lysine decarboxylase-4.1.1.18
43243ornithine decarboxylase+4.1.1.17
43243beta-galactosidase+3.2.1.23
43243alpha-glucosidase-3.2.1.20
43243alpha-galactosidase+3.2.1.22

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
43243samples from Myodes glareolusNetherlandsNetherlandsNLDEurope
63641Myodes glareolus,nasopharynx,Bank volesNetherlandsNLDEurope

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Rodentia (Other)

Safety information

risk assessment

  • @ref: 69000
  • pathogenicity animal: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 43243
  • description: 16S rRNA gene sequences
  • accession: KX858339
  • length: 1358
  • database: ena
  • NCBI tax ID: 1938151

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Rodentibacter myodis Ac151GCA_001999305contigncbi1907939
66792Rodentibacter myodis Ac1512791354954draftimg1907939

GC content

@refGC-contentmethod
4324341
6900041sequence analysis

External links

@ref: 43243

culture collection no.: CCUG 69666, DSM 103994

straininfo link

  • @ref: 96756
  • straininfo: 405808

literature

  • topic: Phylogeny
  • Pubmed-ID: 28629498
  • title: Rodentibacter gen. nov. including Rodentibacter pneumotropicus comb. nov., Rodentibacter heylii sp. nov., Rodentibacter myodis sp. nov., Rodentibacter ratti sp. nov., Rodentibacter heidelbergensis sp. nov., Rodentibacter trehalosifermentans sp. nov., Rodentibacter rarus sp. nov., Rodentibacter mrazii and two genomospecies.
  • authors: Adhikary S, Nicklas W, Bisgaard M, Boot R, Kuhnert P, Waberschek T, Aalbaek B, Korczak B, Christensen H
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001866
  • year: 2017
  • mesh: Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, Bacterial, Nucleic Acid Hybridization, Pasteurellaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rodentia/*microbiology, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43243Sadhana Adhikary, Werner Nicklas, Magne Bisgaard, Ron Boot, Peter Kuhnert, Torsten Waberschek, Bent Aalbaek, Bozena Korczak and Henrik ChristensenRodentibacter gen. nov. including Rodentibacter pneumotropicus comb. nov., Rodentibacter heylii sp. nov., Rodentibacter myodis sp. nov., Rodentibacter ratti sp. nov., Rodentibacter heidelbergensis sp. nov., Rodentibacter trehalosifermentans sp. nov., Rodentibacter rarus sp. nov., Rodentibacter mrazii and two genomospecies10.1099/ijsem.0.001866IJSEM 67: 1793-1806 201728629498
63641Curators of the CCUGhttps://www.ccug.se/strain?id=69666Culture Collection University of Gothenburg (CCUG) (CCUG 69666)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69000Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103994Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103994)
96756Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405808.1