Strain identifier

BacDive ID: 14058

Type strain: No

Species: Shewanella putrefaciens

Strain history: <- B. S. Whitfield, Thor Specialities (UK) Ltd, Wincham; NCIMB 12202

NCBI tax ID(s): 24 (species)

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General

@ref: 6224

BacDive-ID: 14058

DSM-Number: 15988

keywords: Bacteria, mesophilic, human pathogen

description: Shewanella putrefaciens DSM 15988 is a mesophilic human pathogen that was isolated from Metalworking Fluid.

NCBI tax id

  • NCBI tax id: 24
  • Matching level: species

strain history

  • @ref: 6224
  • history: <- B. S. Whitfield, Thor Specialities (UK) Ltd, Wincham; NCIMB 12202

doi: 10.13145/bacdive14058.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Shewanellaceae
  • genus: Shewanella
  • species: Shewanella putrefaciens
  • full scientific name: Shewanella putrefaciens (Lee et al. 1981 ex Derby and Hammer 1931) MacDonell and Colwell 1986

  • synonyms

    • @ref: 20215
    • synonym: Alteromonas putrefaciens

@ref: 6224

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella putrefaciens

full scientific name: Shewanella putrefaciens (Lee et al. 1981) MacDonell and Colwell 1986

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlink
6224TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
6224COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf

culture temp

  • @ref: 6224
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose-fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6836935581indole-
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68368cytochrome oxidase+1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
6224----+---+-----------+

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6224+--++-+++-+--++/----+/---
6224+-----+--+-------+--+

Isolation, sampling and environmental information

isolation

  • @ref: 6224
  • sample type: Metalworking Fluid
  • geographic location: Cheshire
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Industrial
  • Cat3: #Engineered product

Safety information

risk assessment

  • @ref: 6224
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 6224

culture collection no.: DSM 15988, NCIMB 12202

straininfo link

  • @ref: 83227
  • straininfo: 60623

Reference

@idauthorscataloguedoi/urltitle
6224Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15988)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15988
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68368Automatically annotated from API 20E
68369Automatically annotated from API 20NE
83227Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID60623.1StrainInfo: A central database for resolving microbial strain identifiers