Strain identifier
BacDive ID: 14057
Type strain: 
Species: Shewanella putrefaciens
Strain history: <- LMG
NCBI tax ID(s): 24 (species)
version 8.1 (current version)
General
@ref: 3580
BacDive-ID: 14057
DSM-Number: 9461
keywords: 16S sequence, Bacteria, mesophilic, human pathogen
description: Shewanella putrefaciens DSM 9461 is a mesophilic human pathogen that was isolated from Butter.
NCBI tax id
- NCBI tax id: 24
- Matching level: species
strain history
- @ref: 3580
- history: <- LMG
doi: 10.13145/bacdive14057.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella putrefaciens
- full scientific name: Shewanella putrefaciens (Lee et al. 1981 ex Derby and Hammer 1931) MacDonell and Colwell 1986
synonyms
- @ref: 20215
- synonym: Alteromonas putrefaciens
@ref: 3580
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella putrefaciens
full scientific name: Shewanella putrefaciens (Lee et al. 1981) MacDonell and Colwell 1986
type strain: no
Culture and growth conditions
culture medium
- @ref: 3580
- name: OXOID NUTRIENT BROTH (DSMZ Medium 948)
- growth: yes
- link: https://mediadive.dsmz.de/medium/948
- composition: Name: OXOID NUTRIENT BROTH (DSMZ Medium 948) Composition: Nutrient broth 13.0 g/l Distilled water
culture temp
- @ref: 3580
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 54763
- sample type: Butter
isolation source categories
- Cat1: #Engineered
- Cat2: #Food production
- Cat3: #Dairy product
Safety information
risk assessment
- @ref: 3580
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Shewanella putrefaciens gene for 16S rRNA, partial sequence, strain: NBRC 3910 | AB680169 | 1446 | ena | 24 |
| 20218 | Shewanella algae strain ATCC 8073 16S ribosomal RNA gene, partial sequence | AF005250 | 1528 | ena | 38313 |
| 20218 | Shewanella putrefaciens LMG 2369 16S rRNA gene | AJ000213 | 1524 | ena | 24 |
External links
@ref: 3580
culture collection no.: DSM 9461, ATCC 8073, IFO 3910, LMG 2369, NBRC 3910, NCIB 10473, CCUG 39358
straininfo link
- @ref: 83226
- straininfo: 14328
literature
- topic: Metabolism
- Pubmed-ID: 10556712
- title: Identification of the syntrophic partners in a coculture coupling anaerobic methanol oxidation to Fe(III) reduction.
- authors: Daniel R, Warnecke F, Potekhina JS, Gottschalk G
- journal: FEMS Microbiol Lett
- DOI: 10.1111/j.1574-6968.1999.tb08796.x
- year: 1999
- mesh: Anaerobiosis, Clostridium/classification/genetics/growth & development/*metabolism, Culture Media, Ferric Compounds/*metabolism, Geologic Sediments, Methane/metabolism, Methanol/*metabolism, Oxidation-Reduction, RNA, Ribosomal, 16S/genetics, Shewanella/genetics/isolation & purification, Shewanella putrefaciens/classification/genetics/growth & development/*metabolism, *Water Microbiology
- topic2: Phylogeny
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3580 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9461) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9461 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 54763 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 39358) | https://www.ccug.se/strain?id=39358 | |||
| 83226 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID14328.1 | StrainInfo: A central database for resolving microbial strain identifiers |