Strain identifier

BacDive ID: 140530

Type strain: Yes

Species: Sporolactobacillus shoreicorticis

Strain Designation: MK21-7

NCBI tax ID(s): 1923877 (species)

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General

@ref: 43312

BacDive-ID: 140530

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped, colony-forming

description: Sporolactobacillus shoreicorticis MK21-7 is a facultative anaerobe, spore-forming, mesophilic bacterium that forms circular colonies and was isolated from Siamese Sal tree bark collected from Mahasarakham Province in the north east of Thailand.

NCBI tax id

  • NCBI tax id: 1923877
  • Matching level: species

doi: 10.13145/bacdive140530.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Sporolactobacillaceae
  • genus: Sporolactobacillus
  • species: Sporolactobacillus shoreicorticis
  • full scientific name: Sporolactobacillus shoreicorticis Tolieng et al. 2017

@ref: 43312

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Sporolactobacillaceae

genus: Sporolactobacillus

species: Sporolactobacillus shoreicorticis

strain designation: MK21-7

type strain: yes

Morphology

cell morphology

  • @ref: 43312
  • gram stain: positive
  • cell length: 1.5-3.1 µm
  • cell width: 0.4-0.5 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: peritrichous

colony morphology

  • @ref: 43312
  • colony size: 1-2 mm
  • colony color: white
  • colony shape: circular
  • incubation period: 2 days
  • medium used: GYP agar

Culture and growth conditions

culture medium

@refnamegrowth
43312GYP brothyes
43312GYP agaryes

culture temp

@refgrowthtypetemperaturerange
43312positiveoptimum30mesophilic
43312positivegrowth20-40

culture pH

  • @ref: 43312
  • ability: positive
  • type: growth
  • pH: 4.5-8

Physiology and metabolism

oxygen tolerance

  • @ref: 43312
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 43312
  • spore description: oval and terminal endospores
  • type of spore: endospore
  • spore formation: yes

halophily

  • @ref: 43312
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-3 %(w/v)

observation

@refobservation
43312quinone MK-7
43312meso-diaminopimelic acid

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4331217632nitrate-reduction
43312506227N-acetylglucosamine+builds acid from
4331230849L-arabinose+builds acid from
4331215824D-fructose+builds acid from
4331212936D-galactose+builds acid from
4331217634D-glucose+builds acid from
4331216024D-mannose+builds acid from
4331216899D-mannitol+builds acid from
4331228053melibiose+builds acid from
43312320061methyl alpha-D-glucopyranoside+builds acid from
4331217992sucrose+builds acid from
4331216443D-tagatose+builds acid from
4331227082trehalose+builds acid from
4331217306maltose+/-builds acid from
4331216634raffinose+/-builds acid from
4331262345L-rhamnose+/-builds acid from
4331215963ribitol-builds acid from
433124853esculin-builds acid from
4331227613amygdalin-builds acid from
4331218333D-arabitol-builds acid from
4331218403L-arabitol-builds acid from
4331218305arbutin-builds acid from
4331216813galactitol-builds acid from
4331217057cellobiose-builds acid from
4331217113erythritol-builds acid from
4331228847D-fucose-builds acid from
4331218287L-fucose-builds acid from
4331228066gentiobiose-builds acid from
4331217754glycerol-builds acid from
4331228087glycogen-builds acid from
4331217268myo-inositol-builds acid from
4331215443inulin-builds acid from
4331217716lactose-builds acid from
4331262318D-lyxose-builds acid from
433126731melezitose-builds acid from
4331243943methyl alpha-D-mannoside-builds acid from
4331232032potassium gluconate-builds acid from
43312168082-dehydro-D-gluconate-builds acid from
43312581435-dehydro-D-gluconate-builds acid from
4331216988D-ribose-builds acid from
4331217814salicin-builds acid from
4331217924D-sorbitol-builds acid from
4331217266L-sorbose-builds acid from
4331228017starch-builds acid from
4331232528turanose-builds acid from
4331217151xylitol-builds acid from
4331274863methyl beta-D-xylopyranoside-builds acid from
4331265327D-xylose-builds acid from
4331265328L-xylose-builds acid from

metabolite production

  • @ref: 43312
  • Chebi-ID: 24996
  • metabolite: DL-lactate
  • production: yes

enzymes

@refvalueactivityec
43312catalase-1.11.1.6
43312cytochrome oxidase-1.9.3.1
43312acid phosphatase+3.1.3.2
43312alkaline phosphatase+/-3.1.3.1
43312esterase+/-
43312alpha-galactosidase+3.2.1.22
43312beta-galactosidase+3.2.1.23
43312alpha-glucosidase+/-3.2.1.20
43312leucine arylamidase+/-3.4.11.1
43312naphthol-AS-BI-phosphohydrolase+/-
43312valine arylamidase+/-
43312chymotrypsin-3.4.4.5
43312cystine arylamidase-3.4.11.3
43312esterase Lipase (C 8)-
43312alpha-fucosidase-3.2.1.51
43312beta-glucosidase-3.2.1.21
43312beta-glucuronidase-3.2.1.31
43312lipase (C 14)-
43312alpha-mannosidase-3.2.1.24
43312N-acetyl-beta-glucosaminidase-3.2.1.52
43312trypsin-3.4.21.4

Isolation, sampling and environmental information

isolation

  • @ref: 43312
  • sample type: Siamese Sal (Shorea obtusa) tree bark collected from Mahasarakham Province in the north east of Thailand
  • geographic location: Mahasarakham Province
  • country: Thailand
  • origin.country: THA
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Bark

taxonmaps

  • @ref: 69479
  • File name: preview.99_66637.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_414;96_3495;97_4284;98_47023;99_66637&stattab=map
  • Last taxonomy: Sporolactobacillus
  • 16S sequence: LC062596
  • Sequence Identity:
  • Total samples: 1
  • soil counts: 1

Sequence information

16S sequences

@refdescriptionaccessiondatabase
4331216S rRNA gene sequenceLC062596nuccore
4331216S rRNA gene sequenceLC199489nuccore

Genome sequences

  • @ref: 66792
  • description: Sporolactobacillus shoreicorticis LMG 29111
  • accession: GCA_024125445
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1923877

GC content

  • @ref: 43312
  • GC-content: 43.1
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes66.306no
gram-positiveyes90.611yes
anaerobicno93.964yes
aerobicno92.308yes
halophileno69.041no
spore-formingyes95.942yes
motileyes90.401yes
glucose-fermentno53.52no
thermophileno98.877no
glucose-utilyes83.957no

External links

@ref: 43312

culture collection no.: NBRC 111517, LMG 29111, TISTR 2466

literature

  • topic: Phylogeny
  • Pubmed-ID: 28699867
  • title: Sporolactobacillus shoreicorticis sp.nov., a lactic acid-producing bacterium isolated from tree bark.
  • authors: Tolieng V, Prasirtsak B, Miyashita M, Shibata C, Tanaka N, Thongchul N, Tanasupawat S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001959
  • year: 2017
  • mesh: Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, *Lactic Acid, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plant Bark/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43312Vasana Tolieng, Budsabathip Prasirtsak, Mika Miyashita, Chiyo Shibata, Naoto Tanaka, Nuttha Thongchul, Somboon TanasupawatSporolactobacillus shoreicorticis sp.nov., a lactic acid-producing bacterium isolated from tree bark10.1099/ijsem.0.001959IJSEM 67: 2363-2369 201728699867
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/