Strain identifier

BacDive ID: 140525

Type strain: Yes

Species: Algoriphagus marinus

Strain Designation: am2

Strain history: <- Zong-jun Du, Shandong Univ.

NCBI tax ID(s): 1925762 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 8.1 (current version)

General

@ref: 43299

BacDive-ID: 140525

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, coccus-shaped, colony-forming

description: Algoriphagus marinus am2 is a facultative anaerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from coastal area of Weihai.

NCBI tax id

  • NCBI tax id: 1925762
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Zong-jun Du, Shandong Univ.

doi: 10.13145/bacdive140525.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Cyclobacteriaceae
  • genus: Algoriphagus
  • species: Algoriphagus marinus
  • full scientific name: Algoriphagus marinus Han et al. 2017

@ref: 43299

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Cyclobacteriaceae

genus: Algoriphagus

species: Algoriphagus marinus

strain designation: am2

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
43299negative0.5-1.1 µm0.4-0.5 µmcoccus-shapedno
67771no
67771negative

colony morphology

  • @ref: 43299
  • colony size: 1-2 mm
  • colony color: orange
  • colony shape: circular
  • incubation period: 3 days
  • medium used: Marine agar 2216

Culture and growth conditions

culture medium

  • @ref: 43299
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
43299positiveoptimum33mesophilic
43299positivegrowth4-40
67771positivegrowth30-33mesophilic

culture pH

@refabilitytypepHPH range
43299positivegrowth6.5-8.5alkaliphile
43299positiveoptimum8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43299facultative anaerobe
67771facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
43299NaClpositivegrowth0-6 %
43299NaClpositiveoptimum1 %

observation

@refobservation
43299quinone MK-7
67771quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4329917632nitrate-reduction
4329953424tween 20+hydrolysis
4329953423tween 40+hydrolysis
4329953425tween 60+hydrolysis
4329953426tween 80+hydrolysis
4329916991dna+hydrolysis
4329928017starch-degradation
4329985146carboxymethylcellulose-degradation
432992509agar-degradation
4329930849L-arabinose+builds acid from
4329965327D-xylose+builds acid from
4329917634D-glucose+builds acid from
4329948095D-fructose+builds acid from
4329916024D-mannose+builds acid from
4329917306maltose+builds acid from
4329962345L-rhamnose+builds acid from
4329912936D-galactose+builds acid from
4329917814salicin+builds acid from
4329917057cellobiose+builds acid from
4329917716lactose+builds acid from
43299506227N-acetylglucosamine+builds acid from
4329918305arbutin+builds acid from
432994853esculin+builds acid from
4329928053melibiose+builds acid from
4329917992sucrose+builds acid from
4329927082trehalose+builds acid from
4329916634raffinose+builds acid from
4329928017starch+builds acid from
4329928066gentiobiose+builds acid from
4329932528turanose+builds acid from
4329962318D-lyxose+builds acid from
43299581435-dehydro-D-gluconate+builds acid from
4329916947citrate+carbon source
4329928938ammonium+nitrogen source
4329923652dextrin+carbon source
4329917306maltose+carbon source
4329927082trehalose+carbon source
4329917992sucrose+carbon source
4329917057cellobiose+carbon source
4329932528turanose+carbon source
4329917164stachyose+carbon source
4329916634raffinose+carbon source
43299506227N-acetylglucosamine+carbon source
4329928053melibiose+carbon source
4329917814salicin+carbon source
4329963154N-acetyl-beta-D-mannosamine+carbon source
4329928037N-acetylgalactosamine+carbon source
4329916024D-mannose+carbon source
4329915824D-fructose+carbon source
4329912936D-galactose+carbon source
4329928847D-fucose+carbon source
4329918287L-fucose+carbon source
4329914314D-glucose 6-phosphate+carbon source
4329978697D-fructose 6-phosphate+carbon source
4329962345L-rhamnose+carbon source
4329916467L-arginine+carbon source
4329929991L-aspartate+carbon source
4329929985L-glutamate+carbon source
4329918183L-pyroglutamic acid+carbon source
4329917309pectin+carbon source
4329953071L-galactonate+carbon source
432998391D-gluconate+carbon source
4329915748D-glucuronate+carbon source
4329926490quinate+carbon source
4329930612D-glucarate+carbon source
43299309162-oxoglutarate+carbon source
4329915588D-malate+carbon source
4329915589L-malate+carbon source
43299370543-hydroxybutyrate+carbon source
4329917268myo-inositol+carbon source
4329913705acetoacetate+carbon source

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
4329931168acetylspiramycinyesyes30 µg (disc)
4329928971ampicillinyesyes10 µg (disc)
43299204928cefotaximeyesyes30 µg (disc)
4329929007ceftriaxoneyesyes30 µg (disc)
4329917698chloramphenicolyesyes30 µg (disc)
4329948923erythromycinyesyes15 µg (disc)
4329917833gentamicinyesyes10 µg (disc)
432996104kanamycinyesyes30 µg (disc)
432996472lincomycinyesyes2 µg (disc)
432997507neomycinyesyes30 µg (disc)
43299100246norfloxacinyesyes10 µg (disc)
432997731ofloxacinyesyes5 µg (disc)
4329918208penicillin gyesyes10 µg (disc)
4329928077rifampicinyesyes5 µg (disc)
4329917076streptomycinyesyes10 µg (disc)
4329927902tetracyclineyesyes30 µg (disc)
4329928864tobramycinyesyes10 µg (disc)
4329928001vancomycinyesyes30 µg (disc)

metabolite production

@refChebi-IDmetaboliteproduction
4329953424tween 20no
4329935581indoleno
4329916136hydrogen sulfideno
4329915688acetoinyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testcitrate test
4329915688acetoin+
4329916947citrate+

enzymes

@refvalueactivityec
43299cytochrome oxidase-1.9.3.1
43299catalase+1.11.1.6
43299urease+3.5.1.5
43299gelatinase+
43299amylase+
43299lysine decarboxylase-4.1.1.18
43299ornithine decarboxylase-4.1.1.17
43299arginine dihydrolase-3.5.3.6
43299tryptophan deaminase-4.1.99.1
43299alkaline phosphatase+3.1.3.1
43299leucine arylamidase+3.4.11.1
43299valine arylamidase+
43299alpha-chymotrypsin+3.4.21.1
43299trypsin+3.4.21.4
43299acid phosphatase+3.1.3.2
43299naphthol-AS-BI-phosphohydrolase+
43299beta-galactosidase+3.2.1.23
43299alpha-glucosidase+3.2.1.20
43299beta-glucosidase+3.2.1.21
43299N-acetyl-beta-glucosaminidase+3.2.1.52
43299esterase (C 4)-
43299esterase Lipase (C 8)-
43299lipase (C 14)-
43299cystine arylamidase-3.4.11.3
43299alpha-galactosidase-3.2.1.22
43299beta-glucuronidase-3.2.1.31
43299alpha-mannosidase-3.2.1.24
43299beta-mannosidase-3.2.1.25

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    43299C15:02.5
    43299C15:1ω6c2.6
    43299C16:1ω5c1
    43299C17:1 iso ω9c7.8
    43299C17:1ω6c2.4
    43299C15:0 iso34.9
    43299C15:0 anteiso2.5
    43299C15:1 iso G4
    43299C16:0 iso5.8
    43299C16:1 iso H7.4
    43299C17:0 iso1.4
    43299C15:0 iso 3OH3
    43299C16:0 iso 3OH0.8
    43299C17:0 2OH0.5
    43299C17:0 iso 3OH5.1
    43299C16:1ω7c / C15:0 iso 2OH7.8
    43299iso-C17:1 l / anteiso-C17:1 B3.9
    43299Unknown 13.5652.213565
    43299Unknown 14.9591.414959
  • type of FA analysis: whole cell analysis
  • incubation medium: Marine agar 2216
  • agar/liquid: agar
  • incubation temperature: 33
  • incubation time: 3
  • software version: Sherlock 4.5
  • system: MIS MIDI
  • instrument: Agilent 6890 N gas chromatograph

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
43299coastal area of WeihaiWeihaiChinaCHNAsia37121
67771From marine sedimentsthe coastal area of WeihaiChinaCHNAsia37.4833121.964

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Coast

Sequence information

16S sequences

  • @ref: 43299
  • description: 16S rRNA gene sequence
  • accession: KX839492
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Algoriphagus marinus am2GCA_001936475contigncbi1925762
66792Algoriphagus marinus am22791355058draftimg1925762

GC content

  • @ref: 67771
  • GC-content: 40.6

External links

@ref: 43299

culture collection no.: KCTC 52549, MCCC 1H00178

literature

  • topic: Phylogeny
  • Pubmed-ID: 28699874
  • title: Algoriphagus marinus sp. nov., isolated from marine sediment and emended description of the genus Algoriphagus.
  • authors: Han JR, Geng QL, Wang FQ, Du ZJ, Chen GJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001971
  • year: 2017
  • mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43299Ji-Ru Han, Qing-Li Geng, Feng-Qing Wang, Zong-Jun Du, Guan-Jun ChenAlgoriphagus marinus sp. nov., isolated from marine sediment and emended description of the genus Algoriphagus10.1099/ijsem.0.001971IJSEM 67: 2412-2417 201728699874
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc