General

@ref: 43028

BacDive-ID: 140421

DSM-Number: 27698

keywords: 16S sequence, Bacteria, mesophilic

description: Sphingobacterium rhinocerotis DSM 27698 is a mesophilic bacterium that was isolated from rhinoceros faeces.

NCBI tax id

• NCBI tax id: 1453594
• Matching level: species

strain history

• @ref: 43028
• history: <- Y. Jiang, YIM; YIM 101302

doi: 10.13145/bacdive140421.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacteroidota
• domain: Bacteria
• phylum: Bacteroidota
• class: Sphingobacteriia
• order: Sphingobacteriales
• family: Sphingobacteriaceae
• genus: Sphingobacterium
• species: Sphingobacterium rhinocerotis
• full scientific name: Sphingobacterium rhinocerotis Li et al. 2015

@ref: 43028

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Flavobacteriales

family: Sphingobacteriaceae

genus: Sphingobacterium

species: Sphingobacterium rhinocerotis

full scientific name: Sphingobacterium rhinocerotis Li et al. 2017

type strain: no

Culture and growth conditions

culture medium

• @ref: 43028
• name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)
• growth: yes
• link: https://mediadive.dsmz.de/medium/545
• composition: Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

culture temp

• @ref: 43028
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 43028
• sample type: rhinoceros faeces
• geographic location: Yunnan province, Yunnan Wild Animal Park
• country: China
• origin.country: CHN
• continent: Asia

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_179009.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15366;96_16653;97_86030;98_116845;99_179009&stattab=map
• Last taxonomy: Sphingobacterium rhinocerotis subclade
• 16S sequence: KJ190943
• Sequence Identity:
• Total samples: 1213
• soil counts: 360
• aquatic counts: 84
• animal counts: 750
• plant counts: 19

Sequence information

16S sequences

• @ref: 43028
• description: Sphingobacterium rhinocerotis strain YIM 101302 16S ribosomal RNA gene, partial sequence
• accession: KJ190943
• length: 1547
• database: ena
• NCBI tax ID: 1453594

GC content

• @ref: 43028
• GC-content: 38.9
• method: high performance liquid chromatography (HPLC)

External links

@ref: 43028

culture collection no.: DSM 27698, CCTCC AB 2013218, KCTC 42533, YIM 101302

literature

• topic: Phylogeny
• Pubmed-ID: 26303282
• title: Sphingobacterium rhinocerotis sp. nov., isolated from the faeces of Rhinoceros unicornis.
• authors: Li GD, Chen X, Li QY, Xu FJ, Qiu SM, Jiang Y, Jiang CL
• journal: Antonie Van Leeuwenhoek
• DOI: 10.1007/s10482-015-0563-7
• year: 2015
• mesh: Animals, Feces/*microbiology, Lipid Metabolism, Perissodactyla/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sphingobacterium/*classification/genetics/isolation & purification/metabolism
• topic2: Metabolism

Reference