Strain identifier
BacDive ID: 140407
Type strain: 
Species: Vreelandella lionensis
Strain Designation: RHS90
Strain history: <- F. Gaboyer, IUEM, Univ. Brest, Plouzané, France; RHS90 <- K. Alain
NCBI tax ID(s): 1144478 (species)
version 8.1 (current version)
General
@ref: 43014
BacDive-ID: 140407
DSM-Number: 25632
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Vreelandella lionensis RHS90 is a mesophilic bacterium that was isolated from marine sediments.
NCBI tax id
- NCBI tax id: 1144478
- Matching level: species
strain history
- @ref: 43014
- history: <- F. Gaboyer, IUEM, Univ. Brest, Plouzané, France; RHS90 <- K. Alain
doi: 10.13145/bacdive140407.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Vreelandella
- species: Vreelandella lionensis
- full scientific name: Vreelandella lionensis (Gaboyer et al. 2014) De la Haba et al. 2023
synonyms
- @ref: 20215
- synonym: Halomonas lionensis
@ref: 43014
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Halomonas
species: Halomonas lionensis
full scientific name: Halomonas lionensis Gaboyer et al. 2014
strain designation: RHS90
type strain: no
Culture and growth conditions
culture medium
- @ref: 43014
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 43014
- growth: positive
- type: growth
- temperature: 25-30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 43014
- sample type: marine sediments
- geographic location: Mediterranean Sea, Gulf of Lions
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
Sequence information
16S sequences
- @ref: 43014
- description: Halomonas lionensis strain RHS90 16S ribosomal RNA, partial sequence
- accession: NR_126205
- length: 1427
- database: nuccore
- NCBI tax ID: 1144478
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halomonas lionensis RHS90 | GCA_002087295 | contig | ncbi | 1144478 |
| 66792 | Halomonas lionensis RHS90 | 2791355136 | draft | img | 1144478 |
GC content
- @ref: 43014
- GC-content: 54.4
External links
@ref: 43014
culture collection no.: DSM 25632, CIP 110370, UBOCC 3186
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25086262 | Physiological features of Halomonas lionensis sp. nov., a novel bacterium isolated from a Mediterranean Sea sediment. | Gaboyer F, Vandenabeele-Trambouze O, Cao J, Ciobanu MC, Jebbar M, Le Romancer M, Alain K | Res Microbiol | 10.1016/j.resmic.2014.07.009 | 2014 | Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Halomonas/*classification/genetics/isolation & purification/*physiology, Mediterranean Sea, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Polyhydroxyalkanoates/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism | Genetics |
| Phylogeny | 28596390 | Draft Genome of Halomonas lionensis RHS90(T), a Stress-Tolerant Gammaproteobacterium Isolated from Mediterranean Sea Sediments. | Gaboyer F, Maignien L, Jebbar M, Alain K | Genome Announc | 10.1128/genomeA.00311-17 | 2017 | Stress |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 43014 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25632 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25632) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |