Strain identifier

BacDive ID: 140346

Type strain: Yes

Species: Alloscardovia venturai

Strain Designation: MOZIV/2

Strain history: <- J. Killer, Inst. Animal Physiol. and Genetics, Czech Acad. Sci., Prague; MOZIV/2

NCBI tax ID(s): 1769421 (species)

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General

@ref: 42953

BacDive-ID: 140346

DSM-Number: 100237

keywords: 16S sequence, Bacteria, anaerobe, Gram-positive, rod-shaped, colony-forming

description: Alloscardovia venturai MOZIV/2 is an anaerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from oral cavity of guinea pig .

NCBI tax id

  • NCBI tax id: 1769421
  • Matching level: species

strain history

  • @ref: 42953
  • history: <- J. Killer, Inst. Animal Physiol. and Genetics, Czech Acad. Sci., Prague; MOZIV/2

doi: 10.13145/bacdive140346.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Alloscardovia
  • species: Alloscardovia venturai
  • full scientific name: Alloscardovia venturai Sechovcová et al. 2017

@ref: 42953

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Alloscardovia

species: Alloscardovia venturai

full scientific name: Alloscardovia venturai Sechovcová et al. 2017

strain designation: MOZIV/2

type strain: yes

Morphology

cell morphology

  • @ref: 43851
  • gram stain: positive
  • cell length: 0.7-1.3 µm
  • cell width: 0.2-0.6 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 43851
  • colony size: 1.2-2.6 mm
  • colony color: creamy white to yellowish
  • colony shape: circular
  • incubation period: 3 days
  • medium used: Tryptone yeast extract agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43851Tryptone yeast extract agaryes
42953BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)yeshttps://mediadive.dsmz.de/medium/58Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water

culture temp

@refgrowthtypetemperaturerange
43851positivegrowth30-40
43851positiveoptimum37mesophilic
42953positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
43851positivegrowth4.5-8.5alkaliphile
43851positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 43851
  • oxygen tolerance: anaerobe

spore formation

  • @ref: 43851
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
43851168082-dehydro-D-gluconate-builds acid from
4385117057cellobiose-builds acid from
4385116024D-mannose-builds acid from
4385128066gentiobiose-builds acid from
4385128087glycogen-builds acid from
438516731melezitose-builds acid from
4385128017starch-builds acid from
4385127082trehalose-builds acid from
4385132528turanose-builds acid from
4385117057cellobiose-fermentation
4385132528turanose-fermentation
438515291gelatin-hydrolysis
4385127613amygdalin+builds acid from
4385115824D-fructose+builds acid from
4385112936D-galactose+builds acid from
4385117634D-glucose+builds acid from
4385116988D-ribose+builds acid from
4385165327D-xylose+builds acid from
43851esculin ferric citrate+builds acid from
4385130849L-arabinose+builds acid from
4385117716lactose+builds acid from
43851maltose hydrate+builds acid from
4385128053melibiose+builds acid from
4385116634raffinose+builds acid from
4385117814salicin+builds acid from
4385117992sucrose+builds acid from
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate+builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose+builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose+builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose-builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837118305arbutin+builds acid from
6837127613amygdalin+builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose+builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose+builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

metabolite production

  • @ref: 43851
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
43851fructose-6-phosphate phosphoketolase+4.1.2.22
43851catalase-1.11.1.6
43851cytochrome oxidase-1.9.3.1
43851proline-arylamidase-3.4.11.5
43851phenylalanine arylamidase-
43851glycin arylamidase-
43851alpha-arabinosidase-3.2.1.55
43851phenylalanine arylamidase+
43851esterase (C 4)+
43851serine arylamidase+/-
43851trypsin+/-3.4.21.4

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
42953----+++---+++----------++++-+++++--+----+------+--

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
42953oral cavity of guinea pig (Cavia aperea porcellus)Cavia aperea porcellusCentral Bohemia, PragueCzech RepublicCZEEurope
43851oral cavity of a 14-month-old male home-bred guinea-pig

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Rodentia (Other)
#Host Body-Site#Oral cavity and airways

taxonmaps

  • @ref: 69479
  • File name: preview.99_122157.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_476;97_61720;98_82182;99_122157&stattab=map
  • Last taxonomy: Alloscardovia venturai subclade
  • 16S sequence: KT343144
  • Sequence Identity:
  • Total samples: 580
  • soil counts: 15
  • aquatic counts: 9
  • animal counts: 554
  • plant counts: 2

Safety information

risk assessment

  • @ref: 42953
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessiondatabaselengthNCBI tax ID
43851partial 16S rRNA-23S rRNA intergenic spacer sequenceKT343135nuccore
42953Alloscardovia venturai strain MOZIV/2 16S ribosomal RNA gene, partial sequenceKT343144ena14131769421

GC content

@refGC-contentmethod
4385145.8
4295345.8high performance liquid chromatography (HPLC)

External links

@ref: 42953

culture collection no.: DSM 100237, CCM 8604, LMG 28781

straininfo link

  • @ref: 96645
  • straininfo: 402189

literature

  • topic: Phylogeny
  • Pubmed-ID: 28820091
  • title: Alloscardovia venturai sp. nov., a fructose 6-phosphate phosphoketolase-positive species isolated from the oral cavity of a guinea-pig (Cavia aperea f. porcellus).
  • authors: Sechovcova H, Killer J, Pechar R, Geigerova M, Svejstil R, Salmonova H, Mekadim C, Rada V, Vlkova E, Kofronova O, Benada O
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002031
  • year: 2017
  • mesh: Actinobacteria/*classification/genetics/isolation & purification, Aldehyde-Lyases/*metabolism, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fructose, Genes, Bacterial, Guinea Pigs/*microbiology, Mouth/*microbiology, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42953Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100237Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100237)
43851Hana Sechovcová, Jiri Killer, Radko Pechar, Martina Geigerová, Roman Švejstil, Hana Salmonová, Chahrazed Mekadim, Vojtech Rada, Eva Vlková, Olga Kofronová, Oldrich BenadaAlloscardovia venturai sp. nov., a fructose 6-phosphate phosphoketolase-positive species isolated from the oral cavity of a guinea-pig (Cavia aperea f. porcellus)10.1099/ijsem.0.002031IJSEM 67: 2842-2847 201728820091
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96645Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402189.1