Strain identifier
BacDive ID: 140329
Type strain: 
Species: Kribbella soli
Strain Designation: FMN22
Strain history: <- F. Ozdemir Kocak, Bilecik Seyh Edebali Univ., Turkey; FMN22
NCBI tax ID(s): 1124743 (species)
version 8.1 (current version)
General
@ref: 42936
BacDive-ID: 140329
DSM-Number: 27132
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Kribbella soli FMN22 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1124743
- Matching level: species
strain history
- @ref: 42936
- history: <- F. Ozdemir Kocak, Bilecik Seyh Edebali Univ., Turkey; FMN22
doi: 10.13145/bacdive140329.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Kribbellaceae
- genus: Kribbella
- species: Kribbella soli
- full scientific name: Kribbella soli Ozdemir-Kocak et al. 2017
@ref: 42936
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Kribbellaceae
genus: Kribbella
species: Kribbella soli
full scientific name: Kribbella soli Ozdemir-Kocak et al. 2017
strain designation: FMN22
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 42936 | R2A MEDIUM (DSMZ Medium 830) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf | |
| 42936 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 42936
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 42936
- sample type: soil
- geographic location: Moscow, Yugo Zapadnaya Southwest Troparevsky Forest Park
- country: Russia
- origin.country: RUS
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 42936
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 42936
- description: Kribbella soli strain FMN22 16S ribosomal RNA gene, partial sequence
- accession: JN896613
- length: 1515
- database: ena
- NCBI tax ID: 1124743
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Kribbella soli KCTC 29219 | GCA_004331345 | contig | ncbi | 1124743 |
| 66792 | Kribbella soli strain KCTC 29219 | 1124743.4 | wgs | patric | 1124743 |
| 66792 | Kribbella soli KCTC 29219 | 2867521640 | draft | img | 1124743 |
GC content
- @ref: 42936
- GC-content: 69.3
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 92.738 | no |
| flagellated | no | 97.901 | no |
| gram-positive | yes | 85.531 | no |
| anaerobic | no | 99.276 | no |
| aerobic | yes | 91.535 | no |
| halophile | no | 95.218 | no |
| spore-forming | yes | 87.766 | no |
| thermophile | no | 97.599 | yes |
| glucose-util | yes | 87.755 | no |
| glucose-ferment | no | 87.922 | no |
External links
@ref: 42936
culture collection no.: DSM 27132, KCTC 29219
straininfo link
- @ref: 96632
- straininfo: 405681
literature
- topic: Phylogeny
- Pubmed-ID: 28120200
- title: Kribbella soli sp. nov., isolated from soil.
- authors: Ozdemir-Kocak F, Saygin H, Saricaoglu S, Cetin D, Guven K, Sproer C, Schumann P, Klenk HP, Sahin N, Isik K
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-017-0830-x
- year: 2017
- mesh: Actinobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Genes, Essential, Multilocus Sequence Typing, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Vitamin K 2/analysis
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 42936 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27132 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27132) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 96632 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405681.1 |