Strain identifier

BacDive ID: 140245

Type strain: Yes

Species: Brachyspira suanatina

Strain Designation: AN4859/03

Strain history: <- D.S. Jansson, Natl. Vet. Inst., Uppsala, Sweden; AN4859/03 <- U. Zimmerman, Natl. Vet. Inst., Uppsala, Sweden

NCBI tax ID(s): 381802 (species)

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General

@ref: 42852

BacDive-ID: 140245

DSM-Number: 100974

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Brachyspira suanatina AN4859/03 is a mesophilic bacterium that was isolated from pig with mucohaemorrhagic diarrhoea, rectal swab.

NCBI tax id

  • NCBI tax id: 381802
  • Matching level: species

strain history

  • @ref: 42852
  • history: <- D.S. Jansson, Natl. Vet. Inst., Uppsala, Sweden; AN4859/03 <- U. Zimmerman, Natl. Vet. Inst., Uppsala, Sweden

doi: 10.13145/bacdive140245.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/spirochaetota
  • domain: Bacteria
  • phylum: Spirochaetota
  • class: Spirochaetia
  • order: Brachyspirales
  • family: Brachyspiraceae
  • genus: Brachyspira
  • species: Brachyspira suanatina
  • full scientific name: Brachyspira suanatina Mushtaq et al. 2016

  • synonyms

    • @ref: 20215
    • synonym: Brachyspira suanatina

@ref: 42852

domain: Bacteria

phylum: Spirochaetes

class: Spirochaetia

order: Spirochaetales

family: Brachyspiraceae

genus: Brachyspira

species: Brachyspira suanatina

full scientific name: Brachyspira suanatina Mushtaq et al. 2016

strain designation: AN4859/03

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
42852SERPULINA MURDOCHII MEDIUM (DSMZ Medium 840)yeshttps://mediadive.dsmz.de/medium/840Name: SERPULINA MURDOCHII MEDIUM (DSMZ Medium 840) Composition: NaHCO3 0.03 g/l Glucose 0.015 g/l Bovine serum Air Trypticase soy broth
42852FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)yeshttps://mediadive.dsmz.de/medium/1203Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Distilled water

culture temp

  • @ref: 42852
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan+energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380tryptophan deaminase+4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
42852------+--------++/-------------

Isolation, sampling and environmental information

isolation

  • @ref: 42852
  • sample type: pig with mucohaemorrhagic diarrhoea, rectal swab
  • geographic location: east coast
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Gastrointestinal tract#Rectum
#Infection#Disease
#Infection#Patient#Swab

taxonmaps

  • @ref: 69479
  • File name: preview.99_235.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_69;96_166;97_179;98_200;99_235&stattab=map
  • Last taxonomy: Brachyspira
  • 16S sequence: DQ473575
  • Sequence Identity:
  • Total samples: 11849
  • soil counts: 105
  • aquatic counts: 339
  • animal counts: 11362
  • plant counts: 43

Sequence information

16S sequences

  • @ref: 42852
  • description: Brachyspira suanatina strain AN4859/03 16S ribosomal RNA gene, partial sequence
  • accession: DQ473575
  • length: 1433
  • database: ena
  • NCBI tax ID: 381802

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Brachyspira suanatina AN4859/03GCA_001049755contigncbi381802
66792Brachyspira suanatina AN4859/032713896957draftimg381802

GC content

  • @ref: 42852
  • GC-content: 27
  • method: sequence analysis

External links

@ref: 42852

culture collection no.: DSM 100974, ATCC BAA 2592

straininfo link

  • @ref: 96558
  • straininfo: 397045

literature

  • topic: Phylogeny
  • Pubmed-ID: 26458507
  • title: Brachyspira suanatina sp. nov., an enteropathogenic intestinal spirochaete isolated from pigs and mallards: genomic and phenotypic characteristics.
  • authors: Mushtaq M, Zubair S, Rasback T, Bongcam-Rudloff E, Jansson DS
  • journal: BMC Microbiol
  • DOI: 10.1186/s12866-015-0537-y
  • year: 2015
  • mesh: Animals, Bacterial Typing Techniques, Bacteriophages/genetics, Birds, Brachyspira/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/*chemistry/*genetics, Denmark, Enzymes/analysis, *Genome, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plasmids, *Sequence Analysis, DNA, Sequence Homology, Sweden, Swine
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42852Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100974Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100974)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96558Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397045.1