Strain identifier

BacDive ID: 140132

Type strain: No

Species: Phycicoccus sp.

Strain Designation: 5413S-25

Strain history: <- S.-W. Kwon, KACC; 5413S-25

NCBI tax ID(s): 1902410 (species)

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General

@ref: 42739

BacDive-ID: 140132

DSM-Number: 18561

keywords: 16S sequence, Bacteria

description: Phycicoccus sp. 5413S-25 is a bacterium that was isolated from air sample.

NCBI tax id

  • NCBI tax id: 1902410
  • Matching level: species

strain history

  • @ref: 42739
  • history: <- S.-W. Kwon, KACC; 5413S-25

doi: 10.13145/bacdive140132.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Intrasporangiaceae
  • genus: Phycicoccus
  • species: Phycicoccus sp.
  • full scientific name: Phycicoccus Lee 2006

@ref: 42739

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Intrasporangiaceae

genus: Phycicoccus

species: Phycicoccus sp.

full scientific name: Phycicoccus sp.

strain designation: 5413S-25

type strain: no

Culture and growth conditions

culture medium

  • @ref: 42739
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 42739
  • growth: positive
  • type: growth
  • temperature: 28

Isolation, sampling and environmental information

isolation

  • @ref: 42739
  • sample type: air sample
  • geographic location: Suwon
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Air

taxonmaps

  • @ref: 69479
  • File name: preview.99_4206.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_670;97_776;98_900;99_4206&stattab=map
  • Last taxonomy: Pedococcus
  • 16S sequence: EF493848
  • Sequence Identity:
  • Total samples: 5554
  • soil counts: 3476
  • aquatic counts: 473
  • animal counts: 999
  • plant counts: 606

Sequence information

16S sequences

  • @ref: 42739
  • description: Phycicoccus aerolatum strain 5413S-25 16S ribosomal RNA gene, partial sequence
  • accession: EF493848
  • length: 1398
  • database: nuccore
  • NCBI tax ID: 436355

External links

@ref: 42739

culture collection no.: DSM 18561

straininfo link

  • @ref: 96525
  • straininfo: 397743

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42739Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-18561Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18561)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96525Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397743.1