Strain identifier
BacDive ID: 140109
Type strain: 
Species: Aureibacillus halotolerans
Strain Designation: S1203
Strain history: X.-H. Zhang and J. Liang S1203.
NCBI tax ID(s): 1508390 (species)
version 8.1 (current version)
General
@ref: 42716
BacDive-ID: 140109
DSM-Number: 28697
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile
description: Aureibacillus halotolerans S1203 is a spore-forming, mesophilic, motile bacterium that was isolated from marine surface sediment at a water depth of 864.9 m.
NCBI tax id
- NCBI tax id: 1508390
- Matching level: species
strain history
| @ref | history |
|---|---|
| 42716 | <- X.-H. Zhang, Ocean Univ. China, Qingdao, P. R. China; S1203 <- Z. Zhang |
| 67770 | X.-H. Zhang and J. Liang S1203. |
doi: 10.13145/bacdive140109.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Aureibacillus
- species: Aureibacillus halotolerans
- full scientific name: Aureibacillus halotolerans Liu et al. 2015
@ref: 42716
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Aureibacillus
species: Aureibacillus halotolerans
full scientific name: Aureibacillus halotolerans Liu et al. 2015
strain designation: S1203
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 93.945 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 42716
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 42716 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 42716 | marine surface sediment at a water depth of 864.9 m | Okinawa Trough at station 12 (29° 36.88’ N, 127° 52.87’ E) | China | CHN | Asia | 29.6147 | 127.881 |
| 67770 | Sediment of the northern Okinawa Trough |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_61716.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_27063;97_34006;98_43783;99_61716&stattab=map
- Last taxonomy: Aureibacillus halotolerans subclade
- 16S sequence: KJ620986
- Sequence Identity:
- Total samples: 1984
- soil counts: 1302
- aquatic counts: 201
- animal counts: 149
- plant counts: 332
Safety information
risk assessment
- @ref: 42716
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 42716
- description: Aureibacillus halotolerans strain S1203 16S ribosomal RNA gene, partial sequence
- accession: KJ620986
- length: 1517
- database: ena
- NCBI tax ID: 1508390
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aureibacillus halotolerans strain DSM 28697 | 1508390.3 | wgs | patric | 1508390 |
| 66792 | Aureibacillus halotolerans DSM 28697 | 2795385451 | draft | img | 1508390 |
| 67770 | Aureibacillus halotolerans DSM 28697 | GCA_004363045 | scaffold | ncbi | 1508390 |
GC content
- @ref: 42716
- GC-content: 47.7
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 90.021 | no |
| gram-positive | yes | 86.563 | no |
| anaerobic | no | 99.163 | no |
| aerobic | yes | 95.204 | no |
| halophile | yes | 63.17 | no |
| spore-forming | yes | 92.543 | no |
| thermophile | no | 96.93 | no |
| glucose-util | yes | 90.092 | no |
| flagellated | yes | 67.098 | no |
| glucose-ferment | no | 84.527 | no |
External links
@ref: 42716
culture collection no.: DSM 28697, JCM 30067, MCCC 1K00259
straininfo link
- @ref: 96516
- straininfo: 408240
literature
- topic: Phylogeny
- Pubmed-ID: 28875917
- title: Aureibacillus halotolerans gen. nov., sp. nov., isolated from marine sediment.
- authors: Liu Y, Liang J, Zhang Z, Yu M, Wang M, Zhang XH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000518
- year: 2015
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 42716 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28697 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28697) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 96516 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408240.1 |