Strain identifier

BacDive ID: 140081

Type strain: Yes

Species: Salimicrobium jeotgali

Strain Designation: MJ3

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; MJ3.

NCBI tax ID(s): 1230341 (species)

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General

@ref: 42688

BacDive-ID: 140081

DSM-Number: 105371

keywords: genome sequence, 16S sequence, Bacteria, Gram-positive

description: Salimicrobium jeotgali MJ3 is a Gram-positive bacterium that was isolated from fermented anchovy .

NCBI tax id

  • NCBI tax id: 1230341
  • Matching level: species

strain history

@refhistory
42688<- KACC, Korean Agricultural Culture Collection, 166,Nongsaengmyeong-ro,Iseo-myeon,Wanju-Gun,Jeollabuk-do, Republik of Korea; KACC 16972 <- C.O. Jeon, Chung-Ang University; MJ3
67770C. O. Jeon; Chung-Ang Univ., South Korea; MJ3.

doi: 10.13145/bacdive140081.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Salimicrobium
  • species: Salimicrobium jeotgali
  • full scientific name: Salimicrobium jeotgali Choi et al. 2014

@ref: 42688

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Salimicrobium

species: Salimicrobium jeotgali

full scientific name: Salimicrobium jeotgali Choi et al. 2014

strain designation: MJ3

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 42688
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperature
42688positivegrowth28
67770positivegrowth28

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
42688fermented anchovy (myeolchi-jeot)SeoulRepublic of KoreaKORAsia
67770Jeotgal, Korean salted and fermented seafood (anchovy jeotgal)Republic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Vegetable (incl. Grains)
#Engineered#Food production#Fermented

taxonmaps

  • @ref: 69479
  • File name: preview.99_2402.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1295;97_1539;98_1873;99_2402&stattab=map
  • Last taxonomy: Salimicrobium
  • 16S sequence: KF732837
  • Sequence Identity:
  • Total samples: 1019
  • soil counts: 46
  • aquatic counts: 301
  • animal counts: 650
  • plant counts: 22

Safety information

risk assessment

  • @ref: 42688
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 42688
  • description: Salimicrobium jeotgali strain MJ3 16S ribosomal RNA gene, partial sequence
  • accession: KF732837
  • length: 1561
  • database: nuccore
  • NCBI tax ID: 1230341

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salimicrobium jeotgali MJ3GCA_001685435completencbi1230341
66792Salimicrobium jeotgali DSM 105371GCA_016909095contigncbi1230341
66792Salimicrobium jeotgali strain DSM 1053711230341.13wgspatric1230341
66792Salimicrobium jeotgali strain MJ31230341.7plasmidpatric1230341
66792Salimicrobium jeotgali strain MJ31230341.8plasmidpatric1230341
66792Salimicrobium jeotgali MJ32814123355completeimg1230341
66792Salimicrobium jeotgali DSM 1053712901277488draftimg1230341
66792Salimicrobium jeotgali MJ32519899587draftimg1230341
67770Salimicrobium jeotgali MJ3GCA_000299295contigncbi1230341

GC content

@refGC-contentmethod
4268846.3
6777046.27genome sequence analysis

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesyes73no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes80.029no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.812no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes79.494no
69480spore-formingspore-formingAbility to form endo- or exosporesno51.723no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno89.301yes
69480flagellatedmotile2+Ability to perform flagellated movementyes66.411no

External links

@ref: 42688

culture collection no.: DSM 105371, JCM 19758, KACC 16972

straininfo link

  • @ref: 96494
  • straininfo: 396634

literature

  • topic: Phylogeny
  • Pubmed-ID: 25070217
  • title: Salimicrobium jeotgali sp. nov., isolated from salted, fermented seafood.
  • authors: Choi EJ, Jin HM, Kim KH, Jeon CO
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.062042-0
  • year: 2014
  • mesh: Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seafood/*microbiology, Sequence Analysis, DNA, Sodium Chloride, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Biotechnology

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42688Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105371Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105371)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
96494Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396634.1