Strain identifier
BacDive ID: 140081
Type strain: 
Species: Salimicrobium jeotgali
Strain Designation: MJ3
Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; MJ3.
NCBI tax ID(s): 1230341 (species)
version 9.3 (current version)
General
@ref: 42688
BacDive-ID: 140081
DSM-Number: 105371
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Salimicrobium jeotgali MJ3 is a mesophilic bacterium that was isolated from fermented anchovy .
NCBI tax id
- NCBI tax id: 1230341
- Matching level: species
strain history
| @ref | history |
|---|---|
| 42688 | <- KACC, Korean Agricultural Culture Collection, 166,Nongsaengmyeong-ro,Iseo-myeon,Wanju-Gun,Jeollabuk-do, Republik of Korea; KACC 16972 <- C.O. Jeon, Chung-Ang University; MJ3 |
| 67770 | C. O. Jeon; Chung-Ang Univ., South Korea; MJ3. |
doi: 10.13145/bacdive140081.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Salimicrobium
- species: Salimicrobium jeotgali
- full scientific name: Salimicrobium jeotgali Choi et al. 2014
@ref: 42688
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Salimicrobium
species: Salimicrobium jeotgali
full scientific name: Salimicrobium jeotgali Choi et al. 2014
strain designation: MJ3
type strain: yes
Culture and growth conditions
culture medium
- @ref: 42688
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 42688 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: facultative anaerobe
- confidence: 90
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 42688 | fermented anchovy (myeolchi-jeot) | Seoul | Republic of Korea | KOR | Asia |
| 67770 | Jeotgal, Korean salted and fermented seafood (anchovy jeotgal) | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Vegetable (incl. Grains) |
| #Engineered | #Food production | #Fermented |
taxonmaps
- @ref: 69479
- File name: preview.99_2402.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1295;97_1539;98_1873;99_2402&stattab=map
- Last taxonomy: Salimicrobium
- 16S sequence: KF732837
- Sequence Identity:
- Total samples: 1019
- soil counts: 46
- aquatic counts: 301
- animal counts: 650
- plant counts: 22
Safety information
risk assessment
- @ref: 42688
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 42688
- description: Salimicrobium jeotgali strain MJ3 16S ribosomal RNA gene, partial sequence
- accession: KF732837
- length: 1561
- database: nuccore
- NCBI tax ID: 1230341
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Salimicrobium jeotgali MJ3 | GCA_001685435 | complete | ncbi | 1230341 |
| 66792 | Salimicrobium jeotgali DSM 105371 | GCA_016909095 | contig | ncbi | 1230341 |
| 66792 | Salimicrobium jeotgali strain DSM 105371 | 1230341.13 | wgs | patric | 1230341 |
| 66792 | Salimicrobium jeotgali strain MJ3 | 1230341.7 | plasmid | patric | 1230341 |
| 66792 | Salimicrobium jeotgali strain MJ3 | 1230341.8 | plasmid | patric | 1230341 |
| 66792 | Salimicrobium jeotgali MJ3 | 2814123355 | complete | img | 1230341 |
| 66792 | Salimicrobium jeotgali DSM 105371 | 2901277488 | draft | img | 1230341 |
| 66792 | Salimicrobium jeotgali MJ3 | 2519899587 | draft | img | 1230341 |
| 67770 | Salimicrobium jeotgali MJ3 | GCA_000299295 | contig | ncbi | 1230341 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 42688 | 46.3 | |
| 67770 | 46.27 | genome sequence analysis |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | facultative anaerobe | 90 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 84.9 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 82.6 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 79.8 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 80.029 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.812 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 79.494 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 51.723 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 89.301 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 66.411 | no |
External links
@ref: 42688
culture collection no.: DSM 105371, JCM 19758, KACC 16972
straininfo link
- @ref: 96494
- straininfo: 396634
literature
- topic: Phylogeny
- Pubmed-ID: 25070217
- title: Salimicrobium jeotgali sp. nov., isolated from salted, fermented seafood.
- authors: Choi EJ, Jin HM, Kim KH, Jeon CO
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.062042-0
- year: 2014
- mesh: Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seafood/*microbiology, Sequence Analysis, DNA, Sodium Chloride, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Biotechnology
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 42688 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105371 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105371) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 96494 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396634.1 | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |