Strain identifier

BacDive ID: 140080

Type strain: No

Species: Serratia sp.

Strain Designation: S119

Strain history: <- L. Ludueña; Universidad Nacional de Rio Cuarto, Rio Cuarto, Argentina; S119 <- T. Taurian, National University of Rio Cuarto

NCBI tax ID(s): 239175 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.1 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 9.1 (current version)

General

@ref: 42687

BacDive-ID: 140080

DSM-Number: 105060

keywords: genome sequence, 16S sequence, Bacteria, Gram-negative

description: Serratia sp. S119 is a Gram-negative bacterium that was isolated from peanut nodule.

NCBI tax id

  • NCBI tax id: 239175
  • Matching level: species

strain history

  • @ref: 42687
  • history: <- L. Ludueña; Universidad Nacional de Rio Cuarto, Rio Cuarto, Argentina; S119 <- T. Taurian, National University of Rio Cuarto

doi: 10.13145/bacdive140080.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Serratia
  • species: Serratia sp.
  • full scientific name: Serratia Bizio 1823 (Approved Lists 1980)

@ref: 42687

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Yersiniaceae

genus: Serratia

species: Serratia sp.

full scientific name: Serratia sp.

strain designation: S119

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 100

multimedia

  • @ref: 42687
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_105060.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
42687LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
42687TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 42687
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
42687+-+++----++++++-++++-

Isolation, sampling and environmental information

isolation

  • @ref: 42687
  • sample type: peanut nodule
  • geographic location: Rio Cuarto (Latitude: -33.1333, Longitude: -64.35)
  • country: Argentina
  • origin.country: ARG
  • continent: Middle and South America
  • latitude: 33.1333
  • longitude: 64.35

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root nodule

taxonmaps

  • @ref: 69479
  • File name: preview.99_289.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_244;99_289&stattab=map
  • Last taxonomy: Serratia marcescens
  • 16S sequence: GQ165511
  • Sequence Identity:
  • Total samples: 22704
  • soil counts: 1270
  • aquatic counts: 2336
  • animal counts: 18103
  • plant counts: 995

Sequence information

16S sequences

  • @ref: 42687
  • description: Serratia sp. S119(2009) 16S ribosomal RNA gene, partial sequence
  • accession: GQ165511
  • length: 1376
  • database: nuccore
  • NCBI tax ID: 670805

Genome sequences

  • @ref: 66792
  • description: Serratia sp. S119
  • accession: GCA_001984565
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1118230

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno100no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.074no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no58.069no
69480spore-formingspore-formingAbility to form endo- or exosporesno89.67no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno98.5no
69480flagellatedmotile2+Ability to perform flagellated movementyes77.037no

External links

@ref: 42687

culture collection no.: DSM 105060

straininfo link

  • @ref: 96493
  • straininfo: 408109

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42687Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105060Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105060)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
96493Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID408109.1